Job Description P28629 Confidence 85.82% Date Wed Jan 25 15:20:47 GMT 2012 Rank 400 Aligned Residues 52 % Identity 17% Template c2ya0A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative alkaline amylopullulanase; PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua Resolution 1.85 Å

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		266	.	.	.	270	.	.	.	.	.	.	.	.																							.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	K	P	V	Y	M	V	P	S	R	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	I	I	G	P	I	Y	P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	N	C	T	Y
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	T	H	I	Q	L	L	P	V	L	S	Y	Y	F	V	N	E	L	K	N	H	E	R	L	S	D	Y	A	S	S	N	S	N	Y	N	W	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	Q	N	Y	F	S	L	T	G	M	Y
Template Known Secondary structure		T		S					S			B		B	S	S		B	G	G	G	T	T	S				S			S	S	S		S				S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B	S		S	S	S	B		S	T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.																														.	.	.	.	.	.	.	220	.	.	.	.
		324	.	.									.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.
Query Sequence		D	G	V	.	.	.	.	.	.	.	.	C	Y	N	A	K	E	A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D
Query Conservation					.	.	.	.	.	.	.	.
Alig confidence		.			.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	S	S	D	P	K	N	P	E	K	R	I	A	E	F	K	N	L	I	N	E	I	H	K	R	G	M	G	A	I	L	D
Template Known Secondary structure		.	S	S		T	T	S	T	T																T	T
Template Predicted Secondary structure		.
Template SS confidence
			225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions