Job Description P28629 Confidence 97.79% Date Wed Jan 25 15:20:47 GMT 2012 Rank 291 Aligned Residues 116 % Identity 14% Template c2qzjC_ PDB info PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile Resolution 2.89 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	L	I	V	E	S	E	F	L	H	Q	D	T	W	V	G	N	A	V	E	R	L	A	D	A	L	S	Q	Q	N	V	T	V	I	K	S	T	S	F	D	D	G	F	A	I	L	S	S	N	E	A	I	D	C	L	M	F	S	Y	Q	M	E	H	P	D	E	H	Q	N	V	R	Q	L	I	G	K	L	H	E
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.																																.													.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.																																.													.	.	.	.
Template Sequence		K	I	L	I	I	D	G	D	K	D	N	C	.	.	.	.	.	.	.	.	Q	K	L	K	G	F	L	E	E	K	G	I	S	I	D	L	A	Y	N	C	E	E	A	I	G	K	I	F	S	N	K	.	Y	D	L	I	F	L	E	I	I	L	S	D	.	.	.	.	G	D	G	W	T	L	C	K	K	I	R	N
Template Known Secondary structure								S						.	.	.	.	.	.	.	.										T	T								S										T			.		S						S			T	T	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.																																.													.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.									.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	Q	N	V	P	V	F	L	L	G	D	R	E	K	A	L	A	A	M	D	R	D	L	L	E	L	V	D	E	F	A	W	I	L	E	D	T	A	D	F	I	A	G	R	A	V	A	A	M	T	R
Query Conservation
Alig confidence		.																.																									.
Template Conservation		.																.																									.
Template Sequence		.	V	T	T	C	P	I	V	Y	X	T	Y	I	N	E	D	.	Q	S	I	L	N	A	L	N	S	G	G	D	D	Y	L	I	K	P	L	N	L	E	I	L	.	Y	A	K	V	K	A	I	L	R	R
Template Known Secondary structure		.				S							S					.									T	T		S					S	S							.
Template Predicted Secondary structure		.																.																									.
Template SS confidence
			73	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions