Job Description P28629 Confidence 99.88% Date Wed Jan 25 15:20:47 GMT 2012 Rank 43 Aligned Residues 297 % Identity 16% Template c2po3B_ PDB info PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	E	S	E	K	Y	A	A	R	V	F	G	A	D	R	S	W	S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	C	M	T	D	N	D	V	V	V	V	D	R	N	C	H	K	S	I	E	Q	G	L	M	L	T	G	A	K	P	V	Y	M	V	P	S	R	N	R	Y	G	I	I	G	P	I	Y
Query Conservation
Alig confidence																			.																		.																																				.	.	.	.	.	.	.	.	.
Template Conservation																			.																		.																																				.	.	.	.	.	.	.	.	.
Template Sequence		V	R	E	F	E	E	R	V	A	G	L	A	G	V	R	H	A	.	V	A	T	C	N	A	T	A	G	L	Q	L	L	A	H	A	A	.	G	L	T	G	E	V	I	M	P	S	M	T	F	A	A	T	P	H	A	L	R	W	I	G	L	T	P	V	F	A	D	I	D	P	D	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T	S	S			.				S														.	T			S						S	S	S		T									T	T								B		T	T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																		.																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		2054	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070		.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.		.	.	2090	.	.	.	.	.	.	.	.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.	2120	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	N	C	T	Y	D	G	V	C	Y	N	A	K	E	A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D	E	A	W	Y	G	Y	A	R	F	N	P	I	Y	A	D	H	Y	A	M
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.										.	.																																					.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.										.	.																																					.	.	.
Template Sequence		T	G	N	L	D	P	D	Q	V	A	A	A	V	T	P	R	T	.	.	.	.	.	.	.	.	.	.	S	A	V	V	G	V	H	L	W	.	.	G	R	P	C	A	A	D	Q	L	R	K	V	A	D	E	H	G	L	R	L	Y	F	D	A	A	H	A	L	G	C	A	V	D	G	R	P	.	.	.	A	G	S
Template Known Secondary structure		T	S	S	B		S	T	T							T	T		.	.	.	.	.	.	.	.	.	.								G	G	.	.	G																T								T	T		T	T				T	T			.	.	.	T	T	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.										.	.																																					.	.	.
Template SS confidence
		2123	.	.	.	.	.	.	2130	.	.	.	.	.	.	.	.	.											2140	.	.	.	.	.	.	.	.			.	2150	.	.	.	.	.	.	.	.	.	2160	.	.	.	.	.	.	.	.	.	2170	.	.	.	.	.	.	.	.	.	2180	.	.	.	.				.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.								.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.
Query Sequence		R	G	E	P	G	D	H	N	G	P	T	V	F	A	T	H	S	T	H	K	L	L	N	A	L	S	Q	A	S	Y	I	H	V	R	E	G	R	G	A	I	N	F	S	R	F	N	Q	A	Y	M	M	H	A	T	T	S	P	L	Y	A	I	.	.	.	.	.	.	.	C	A	S	N	D	V	A	V	S	M	M	D
Query Conservation																																																															.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.																									.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.																									.	.	.	.	.
Template Sequence		L	G	D	A	E	.	.	.	.	.	.	.	V	F	S	F	H	A	T	K	A	V	N	A	F	E	G	G	A	V	V	T	D	D	A	D	.	.	.	.	.	L	A	A	R	I	R	A	L	H	N	F	G	F	D	L	P	G	G	S	P	A	G	G	T	N	A	K	M	S	E	A	A	A	A	M	G	L	T	S
Template Known Secondary structure		S	S	S	S		.	.	.	.	.	.	.						T	T	S	S	S			S	S							S				.	.	.	.	.									T	B	T	T	T	T		T	T			T	T				B		B
Template Predicted Secondary structure							.	.	.	.	.	.	.																									.	.	.	.	.
Template SS confidence
		2188	.	2190	.	.								.	.	.	.	.	.	.	2200	.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.						.	.	.	2220	.	.	.	.	.	.	.	.	.	2230	.	.	.	.	.	.	.	.	.	2240	.	.	.	.	.	.	.	.	.	2250	.	.	.	.	.
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	S	G	L	S	L	T	Q	E	V	I	D	E	A	V	D	F	R	Q	A	M	A	R	L	Y	K	E	F	T	A	D	G	S	W	F	F	K	P	W	N	K	E	V	V	T	D	P	Q	T	G	K	T	Y	D	F	A	D	A	P	T	K	L	L	T	T	V	Q	D	C	W	V	M	H	P	G	E	S	W	H
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	A	F	P	E	V	I	D	R	N	R	R	N	H	A	A	Y	R	E	H	L	A	D	L	P	G	V	L	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																							T		S		T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2256	.	.	.	2260	.	.	.	.	.	.	.	.	.	2270	.	.	.	.	.	.	.	.	.	2280	.	.	.	.	.	.
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570																										.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	K	D	I	P	D	N	W	S	M	L	D	P	I	K	V	S	I	L	A	P	G	M	G	E	D	G	E	L	E	E	T	G	V	P	A	A	L	V	T	A	W	L	G	R	H	G	I	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	T	T
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																		.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	D	H	D	R	H	G	L	N	N	H	Q	Y	V	I	V	E	I	.	.	.	.	.	.	.	D	E	A	T	T	G	I	H	R	D	L	V	M	E	V	L	K	A	E	G	V	H	T	R	A	Y	F	S	P	G	C	H	E	L	E	P	Y	R	G	Q	P	H	A	P	L	P	H	T	E	R	L	A
Template Known Secondary structure		.	.	.	.		G	G	G	G	S	B											.	.	.	.	.	.	.						S	S												T	T				B		T	T		S		G	G	G	S	T	T	T	T	T	S
Template Predicted Secondary structure		.	.	.	.																		.	.	.	.	.	.	.
Template SS confidence
						2287	.	.	2290	.	.	.	.	.	.	.	.	.	2300	.	.	.								.	.	.	.	.	.	2310	.	.	.	.	.	.	.	.	.	2320	.	.	.	.	.	.	.	.	.	2330	.	.	.	.	.	.	.	.	.	2340	.	.	.	.	.	.	.	.	.	2350	.	.	.	.	.
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	Q	I	M	F	L	F	S	M	G	V	T	R	G	K	W	G	T	L	V	N	T	L	C	S	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	V	L	S	L	P	T	G	T	A	I	G	D	D	D	I	R	R	V	A	D	L	L	R	L	C
Template Known Secondary structure		T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
		2356	.	.	.	2360	.	.	.	.	.	.	.	.	.	2370	.	.	.	.	.	.	.	.	.	2380	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions