Job Description P28629 Confidence 99.76% Date Wed Jan 25 15:20:47 GMT 2012 Rank 101 Aligned Residues 296 % Identity 13% Template c2fyfB_ PDB info PDB header:transferase Chain: B: PDB Molecule:phosphoserine aminotransferase; PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis Resolution 1.50 Å

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		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		T	G	A	F	G	E	S	E	K	Y	A	A	R	V	F	G	A	D	R	S	.	.	.	W	S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	C	M	T	D	N	D	V	V	V	V	D	R	N	C	H	K	S	I	E	Q	G	L	M	L	T	G	A	K	P	V	Y	M	V	P	S	R	N	R	Y	G
Query Conservation																						.	.	.
Alig confidence																						.	.	.
Template Conservation
Template Sequence		K	N	L	V	G	R	V	R	S	G	L	A	E	L	F	S	L	P	D	G	Y	E	V	I	L	G	N	G	G	A	T	A	F	W	D	A	A	A	F	G	L	I	D	K	R	S	L	H	L	T	Y	G	E	F	S	A	K	F	A	S	A	V	S	K	N	P	F	V	G	E	P	I	I	I	T	S	D	P	G	S
Template Known Secondary structure																T	T			T	T								T													T		S	S								S														T	T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		I	I	G	P	I	Y	P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	N	.	C	T	Y	D	G	V	C	Y	N	A	K	E	A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D	E	A	W	Y	G	Y	A	R	F	N	P	I
Query Conservation																																										.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.													.	.	.	.																	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	Q	T	D	P	S	V	D	V	I	A	W	A	H	N	E	T	S	T	G	V	A	V	A	V	R	R	.	.	.	.	P	E	G	S	D	A	L	V	V	I	D	A	T	S	G	A	.	.	.	.	.	.	.
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T		S						S			T	T	T	T								.	.	.	.		T	T										T	T	T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
		135	.																								.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.																	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	D	H	Y	A	M	R	G	E	P	G	D	H	N	G	P	T	V	F	A	T	H	S	T	H	K	L	L	N	A	L	S	Q	A	S	Y	I	H	V	R	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	A	I	N	F	S	R	F	N	Q	A	Y	M	M	H	A	T	T	S	P
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.												.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.												.	.	.	.	.	.
Template Sequence		.	.	G	G	L	P	V	D	I	A	E	T	D	.	.	.	.	.	.	A	Y	Y	F	A	P	Q	K	N	F	A	S	D	G	G	L	W	L	A	I	M	S	P	A	A	L	S	R	I	E	A	I	A	A	T	G	R	W	V	P	D	F	L	S	L	P	I	A	V	E	N	S	L	K	N	Q	T	Y	N	T	P
Template Known Secondary structure		.	.	T	T	S				G	G	G		S	.	.	.	.	.	.						T	T	S	T	T		S		S	S																				T	T					G	G	G										T	T	T			S	S
Template Predicted Secondary structure		.	.												.	.	.	.	.	.
Template SS confidence
				182	.	.	.	.	.	.	.	190	.	.							.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.		.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		L	Y	A	I	C	A	S	N	D	V	A	V	S	M	M	D	G	N	S	.	G	L	S	L	T	Q	E	V	I	D	E	A	V	D	F	R	Q	A	M	A	R	L	Y	K	E	F	T	A	D	G	S	W	F	F	K	P	W	N	K	E	V	V	T	D	P	Q	T	G	K	T	Y	D	F	A	D	A	P	T	K	L
Query Conservation																					.
Alig confidence																					.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	A	T	L	A	L	L	A	E	Q	I	D	W	L	V	G	N	G	G	L	D	W	A	V	K	R	T	A	D	S	S	Q	R	L	Y	S	W	A	Q	E	R	P	Y	T	T	P	F	V	T	D	P	G	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																			T	T	S																						S	T	T				S			S	G	G	G	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570					.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.
Query SS confidence																																																																						.	.	.	.
Query Sequence		L	T	T	V	Q	D	C	W	V	M	H	P	G	E	S	W	H	G	F	K	D	I	P	D	N	W	S	M	L	D	P	I	K	V	S	I	L	A	P	G	M	G	E	D	G	E	L	E	E	T	G	V	P	A	A	L	V	T	A	W	L	G	R	H	G	I	V	P	.	.	.	.	T	R	T	T	D	F	Q	I
Query Conservation																																																																						.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	V	V	G	T	I	D	F	.	.	.	.	.	.	.	.	.	.	V	D	D	V	D	A	G	T	V	A	K	I	L	R	A	N	G	I	V	D	T	E	P	Y	R	K	L	G	R	N	Q	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S							.	.	.	.	.	.	.	.	.	.		T	T	S												T	T		B			S			T	T	T			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.
Template SS confidence
																															309	310	.	.	.	.	.	.	.											.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	L	F	S	M	G	V	T	R	G	K	W	G	T	L	V	N	T	L	C	S	F	K	R	H	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	A	M	F	P	A	V	E	P	D	D	V	S	A	L	T	E	C	V	D	W	V	V	E	R	L
Template Known Secondary structure							T	T	S																		T
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions