Phyre 2 alignment of P0A703 with c1pd0A

Job Description P0A703
Confidence 44.87% Date Thu Jan 5 11:04:20 GMT 2012

Rank 133 Aligned Residues 23

% Identity 22% Template c1pd0A_

PDB info PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5)

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	72	.	.	.	.	.	.	.							80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.
Query Sequence	W	C	W	D	C	S	Q	V	.	.	.	.	.	.	V	E	I	H	Q	H	D	A	Q	C	P	L	C	H	G
Query Conservation									.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.
Template Conservation
Template Sequence	R	C	R	R	C	R	S	Y	M	N	P	F	V	T	F	I	E	Q	G	R	R	W	R	C	N	F	C	R	L
Template Known Secondary structure	B		S	S	S			B			T	T					T	T	T	T					T	T	T
Template Predicted Secondary structure
Template SS confidence
	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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