Job Description P45544 Confidence 100.00% Date Thu Jan 5 12:03:03 GMT 2012 Rank 2 Aligned Residues 221 % Identity 19% Template c3bwgA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 Resolution 2.09 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	V	R	Q	R	L	L	D	D	I	A	Q	G	V	Y	Q	A	G	Q	Q	I	P	T	E	N	E	L	C	T	Q	Y	N	V	S	R	I	T	I	R	K	A	I	S	D	L	V	A	D	G	V	L	I	R	W	Q	G	K	G	T	F	V	Q	S	Q	K	V	E	N	A	L	L	T	V	S	G	F	T	D	F
Query Conservation
Alig confidence																																																																												.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.
Template Sequence		Q	Q	I	A	T	E	I	E	T	Y	I	E	E	H	Q	L	Q	Q	G	D	K	L	P	V	L	E	T	L	X	A	Q	F	E	V	S	K	S	T	I	T	K	S	L	E	L	L	E	Q	K	G	A	I	F	Q	V	R	G	S	G	I	F	V	R	K	H	K	R	K	G	Y	I	S	L	L	.	.	.	.	.	S
Template Known Secondary structure															T	T			T	T		B											T	T																T	T	S					T	T	T											S				S	S	.	.	.	.	.	G
Template Predicted Secondary structure																																																																												.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.						.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	S	Q	G	K	A	T	K	E	K	V	I	E	Q	E	R	V	S	A	A	P	F	C	E	K	L	N	I	P	G	N	S	E	V	F	H	L	C	R	V	M	Y	L	D	K	E	P	L	F	I	D	S	S	W	I	P	L	S	R	Y	P	D	F	D	E	I	Y	V	E	G	S	S	T	Y	Q	L	F	Q	E
Query Conservation
Alig confidence																																																																									.
Template Conservation																																																																									.
Template Sequence		N	Q	G	D	F	N	V	T	S	K	V	I	E	L	D	V	R	K	P	T	P	E	A	A	E	N	L	N	I	G	X	D	E	D	I	Y	Y	V	K	R	V	R	Y	I	N	G	Q	T	L	C	Y	E	E	S	Y	Y	T	K	S	I	V	T	Y	L	N	N	E	I	V	S	H	.	S	I	F	H	Y	I	R	E
Template Known Secondary structure		G	G																										T			T	T	S												T	T												T	T	T	S									T	S	.
Template Predicted Secondary structure																																																																									.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	D	T	R	V	V	S	D	K	K	T	I	D	I	F	A	A	T	R	P	Q	A	K	W	L	K	C	E	L	G	E	P	L	F	R	I	S	K	I	A	F	D	Q	N	D	K	P	V	H	V	S	E	L	F	C	R	A	N	R	I	T	L	T	I	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	G	L	K	I	G	F	S	D	L	F	L	H	V	G	Q	L	N	E	E	E	A	E	Y	L	G	L	E	A	G	L	P	K	L	Y	I	E	S	I	F	H	L	T	N	G	Q	P	F	D	Y	S	K	I	S	Y	N	Y	E	Q	S	Q	F	V	V	Q	A
Template Known Secondary structure		T	S																									T	S		T	T	S												T	T	S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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