Job Description P45544 Confidence 100.00% Date Thu Jan 5 12:03:03 GMT 2012 Rank 4 Aligned Residues 221 % Identity 24% Template c2wv0H_ PDB info PDB header:transcription Chain: H: PDB Molecule:hth-type transcriptional repressor yvoa; PDBTitle: crystal structure of the gntr-hutc family member yvoa from2 bacillus subtilis Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	D	R	Y	S	H	Q	L	L	Y	A	T	V	R	Q	R	L	L	D	D	I	A	Q	G	V	Y	Q	A	G	Q	Q	I	P	T	E	N	E	L	C	T	Q	Y	N	V	S	R	I	T	I	R	K	A	I	S	D	L	V	A	D	G	V	L	I	R	W	Q	G	K	G	T	F	V	Q	S	Q	K	V	E	N
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.
Template Sequence		N	I	N	K	Q	S	P	I	P	I	Y	Y	Q	I	M	E	Q	L	K	T	Q	I	K	N	G	E	L	Q	P	D	M	P	L	P	S	E	R	E	Y	A	.	.	.	.	.	.	.	.	E	Q	R	Q	A	L	S	N	L	V	N	E	G	L	L	Y	R	L	T	F	V	S	K	P	K	M	E	Q	A	L	Q	G
Template Known Secondary structure					T	T	S	S	S																	T	S	S		T	T		B									.	.	.	.	.	.	.	.											T	T	T	S													S	T	T	T	S	S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.									.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		A	L	L	T	V	S	G	F	T	D	F	G	V	S	Q	G	K	A	T	K	E	K	V	I	E	Q	E	R	V	S	A	A	.	P	F	C	E	K	L	N	I	P	G	N	S	E	V	F	H	L	C	R	V	M	Y	L	D	K	E	P	L	F	I	D	S	S	W	I	P	L	S	R	Y	P	D	F	D	E	I	Y
Query Conservation																																		.
Alig confidence				.	.	.	.																											.								.	.	.	.	.	.
Template Conservation				.	.	.	.																																			.	.	.	.	.	.
Template Sequence		L	T	.	.	.	.	S	F	T	E	D	M	K	S	R	G	M	T	P	G	S	R	L	I	D	Y	Q	L	I	D	S	T	E	E	L	A	A	I	L	S	.	.	.	.	.	.	I	H	K	I	T	R	V	R	L	A	N	D	I	P	M	A	I	E	S	S	H	I	P	F	E	L	A	G	E	L	N	E	S	H
Template Known Secondary structure				.	.	.	.								T	T	T																									.	.	.	.	.	.											T	T																	S			T	T	T
Template Predicted Secondary structure				.	.	.	.																																			.	.	.	.	.	.
Template SS confidence
		86	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	G	S	S	T	Y	Q	L	F	Q	E	R	F	D	T	R	V	V	S	D	K	K	T	I	D	I	F	A	A	T	R	P	Q	A	K	W	L	K	C	E	L	G	E	P	L	F	R	I	S	K	I	A	F	D	Q	N	D	K	P	V	H	V	S	E	L	F	C	R	A	N	R	I	T	L	T	I	D	N	K
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		F	Q	S	S	.	I	Y	D	H	I	E	R	Y	N	S	I	P	I	S	R	A	K	Q	E	L	E	P	S	A	A	T	T	E	E	A	N	I	L	G	I	Q	K	G	A	P	V	L	L	I	K	R	T	T	Y	L	Q	N	G	T	A	F	E	H	A	K	S	V	Y	R	G	D	R	Y	T	F	V	H	Y	M	D
Template Known Secondary structure		T	T	S		.									T																									T	S		T	T													T	T	S												T	T	T
Template Predicted Secondary structure						.
Template SS confidence
		162	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		242
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		241

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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