Return to main results Retrieve Phyre Job Id

Job DescriptionP77503
Confidence95.52%DateThu Jan 5 12:30:02 GMT 2012
Rank458Aligned Residues88
% Identity16%Templatec3uagA_
PDB info PDB header:ligaseChain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d- PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
Resolution1.77 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30.........40.........50.........60.........70.........80.........90
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  RVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQALAEKYGNASVWDDPQAMLLAVKPDVVSVCSPNRFHYEHTL
Query Conservation 

 


 
          
       



 
         
              

    

 
 
 

   
     
Alig confidence 













.






.




.






























.


















Template Conservation   
 
 
 
 

 
 .
  
   .
  
 .


                            .  
 

 

 
    
 
 
Template Sequence  NVVIIGLGLTGLSC. VDFFLAR. GVTPR. VMDTRMTPPGLDKLPEAVERHTGSLNDEWLM. AADLIVASPGIALAHPSLS
Template Known Secondary structure 


S.TT.T


.SSSS
TTGGGS
TTS
SS

T.T
S
TTS
TTS
Template Predicted Secondary structure 


.
.

.











.










Template SS confidence 















































































   7..10.........20 ....... ..30.. .......40.........50.........60... ......70.........80..
 
   91........100..
Predicted Secondary structure 




Query SS confidence 











Query Sequence  MALEAGCHVMCE
Query Conservation   

  

 
  
Alig confidence 











Template Conservation   
      
 
 
Template Sequence  AAADAGIEIVGD
Template Known Secondary structure  TT

Template Predicted Secondary structure 




Template SS confidence 











   83......90....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions