 |
Job Description | P77503 | Confidence | 98.82% | Date | Thu Jan 5 12:30:02 GMT 2012 |
Rank | 86 | Aligned Residues | 126 |
% Identity | 13% | Template | c3l6dB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:putative oxidoreductase; |
PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440
|
Resolution | 1.90 Å |
|
 |
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | M | T | S | S | P | L | R | V | A | I | I | G | A | G | Q | V | A | D | K | V | H | A | S | Y | Y | C | T | R | N | D | L | E | L | V | A | V | C | D | S | R | L | S | Q | A | Q | A | L | A | E | K | Y | G | N | A | S | V | W | D | D | P | Q | A | M | L | L | A | V | K | P | D | V | V | S | V | C | S | P | N | R |
Query Conservation |   |
  |
|   |   |   |   |
|
|
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|
|   |
|   |
|   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|
|
|   |
|
|
|   |
|   |
|
|   |   |
| . |
|   |   |
|   |   |   | . |
|   |   |
|   | . |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . | . |
|   |   |   |   |   |   |   |   |
|   |   |   | . | . |   |
|
|   |
|
|
|   |
|   |   |   |
Template Sequence |   |
S | D | E | S | F | E | F | D | V | S | V | I | G | L | G | A | X | G | T | I | X | . |
A | Q | V | L | L | K | Q | . |
G | K | R | V | A | . |
I | W | N | R | S | P | G | K | A | A | A | L | V | A | A | . |
. |
G | A | H | L | C | E | S | V | K | A | A | L | S | . |
. |
A | S | P | A | T | I | F | V | L | L | D | N |
Template Known Secondary structure |   |
T | G | G | G |
| S |
| S |  |  |  |  |
|
| S |  |  |  |  |  |  | . |  |  |  |  |  |  | T | . | T |
|
|  |  | . |  |  |
| S |
|  |  |  |  |  |  |  |  |  | T | . | . | T |
|  |  |
| S | S |  |  |  |  |  |  | . | . |  | S | S |  |  |  |  |
|
| S | S |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  | . |  |  |  |  |  |  |
| . |
|
|  |  |  | . |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |
|
|  |  |  |  |  |  | . | . |
|
|
|  |  |  |  |  |
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | |
. | . | . | . | . | 30 | . | |
. | . | . | . | . | |
. | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | |
|
. | . | . | . | . | . | . | . | 60 | . | . | . | . | |
|
. | . | . | . | . | 70 | . | . | . | . | . | . |
  |
  |   |
84 | . | . | . | . | . | 90 | . | |
|
|
. | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  | . | . | . |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | H | Y | E | H | T | L | M | . |
. |
. |
A | L | E | A | G | C | H | V | M | C | E | K | P | P | A | M | T | P | E | Q | A | R | E | M | C | D | T | A | R | K | L | G | K | V | L | A | Y | D | F | H | H | R | F | A | L |
Query Conservation |   |
  |
|   |   |   |   |   |   | . | . | . |
|
|   |   |
|
|   |
|   |   |
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
H | A | T | H | E | V | L | G | X | P | G | V | A | R | A | L | A | H | R | T | I | V | D | Y | T | T | N | A | Q | D | E | G | L | A | L | Q | G | L | V | N | Q | A | G | G | H | Y | V | K | G | X | I | V | A | Y | P | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | S | T | T |  |  |  |  |  | T | T |
|  |  |  |  |
| S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  | S |
| G | G |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|