Job Description P77503 Confidence 97.12% Date Thu Jan 5 12:30:02 GMT 2012 Rank 272 Aligned Residues 83 % Identity 19% Template c3l4bG_ PDB info PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima Resolution 3.45 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.
Query Sequence		L	R	V	A	I	I	G	A	G	Q	V	A	D	K	V	H	A	S	Y	Y	C	T	R	N	D	L	E	L	V	A	V	C	D	S	R	L	S	Q	A	Q	A	L	A	E	K	Y	G	N	A	S	V	W	D	D	.	.	.	.	.	P	Q	A	M	L	L	A	V	K	P	D	V	V	S	V	C	S	P	N	R	F
Query Conservation																																																								.	.	.	.	.
Alig confidence																	.								.						.																									.	.	.	.	.
Template Conservation																	.								.						.
Template Sequence		M	K	V	I	I	I	G	G	E	T	T	A	Y	Y	L	.	A	R	S	M	L	S	R	.	K	Y	G	V	V	.	I	I	N	K	D	R	E	L	C	E	E	F	A	K	K	L	K	A	T	I	I	H	G	D	G	S	H	K	E	I	L	R	D	A	E	V	S	K	N	D	V	V	V	I	L	T	P	R	D	E
Template Known Secondary structure																	.							T	.	T					.				S												S	S	S					S		T	T	S								T			T	T								S
Template Predicted Secondary structure																	.								.						.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.		.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Y	E	H	T	L	M	A	L	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	L	F	I	A	Q	L	V	M	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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