Job Description P77503 Confidence 100.00% Date Thu Jan 5 12:30:02 GMT 2012 Rank 24 Aligned Residues 321 % Identity 18% Template c3ip3D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase, putative; PDBTitle: structure of putative oxidoreductase (tm_0425) from2 thermotoga maritima Resolution 2.14 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																															.																				.
Query SS confidence																															.																				.
Query Sequence		L	R	V	A	I	I	G	A	G	Q	V	A	D	K	V	H	A	S	Y	Y	C	T	R	N	D	L	E	L	V	.	A	V	C	D	S	R	L	S	Q	A	Q	A	L	A	E	K	Y	G	N	.	A	S	V	W	D	D	P	Q	A	M	L	L	A	V	K	P	D	V	V	S	V	C	S	P	N	R	F	H	Y	E
Query Conservation																															.																				.
Alig confidence																															.																				.
Template Conservation
Template Sequence		L	K	I	C	V	I	G	S	S	G	H	F	R	Y	A	L	E	G	L	D	E	E	C	S	I	T	G	I	A	P	G	V	P	E	E	D	L	S	K	L	E	K	A	I	S	E	X	N	I	K	P	K	K	Y	N	N	W	W	E	X	L	E	K	E	K	P	D	I	L	V	I	N	T	V	F	S	L	N	G	K
Template Known Secondary structure									S	S	S		T					T	T			T	T									S	S	T	T												T	T	T							S												S						S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		H	T	L	M	A	L	E	A	G	C	H	V	M	C	E	K	P	P	A	M	T	P	E	Q	A	R	E	M	C	D	T	A	R	K	L	G	.	.	K	V	L	A	Y	D	F	H	H	R	F	A	L	D	T	Q	Q	L	R	E	Q	V	T	N	G	V	L	G	E	I	Y	V	T	T	A	R	A	L	R	R	C	G
Query Conservation																																						.	.
Alig confidence																																						.	.
Template Conservation
Template Sequence		I	L	L	E	A	L	E	R	K	I	H	A	F	V	E	K	P	I	A	T	T	F	E	D	L	E	K	I	R	S	V	Y	Q	K	V	R	N	E	V	F	F	T	A	X	F	G	I	R	Y	R	P	H	F	L	T	A	K	K	L	V	S	E	G	A	V	G	E	I	R	L	V	N	T	Q	K	S	Y	K	L	G
Template Known Secondary structure									T	T							S	S	S		S	S															T	T	T								G	G	G	G	S												T	T	T	T		S										B	B
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	G	W	G	V	F	T	N	K	E	L	Q	G	G	G	P	L	I	D	I	G	I	H	M	L	D	A	A	M	Y	V	L	G	F	P	A	V	K	S	V	N	A	H	S	F	Q	K	I	G	T	Q	K	S	C	G	Q	F	G	E	W	D	P	A	T	Y	S	V	E	D	S	L	F	G	T	I	E	F	H	N
Query Conservation
Alig confidence						.	.																														.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.																														.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	R	P	D	.	.	F	Y	K	K	R	E	T	Y	G	G	T	I	P	W	V	G	I	H	A	I	D	W	I	H	W	I	T	G	K	.	K	F	L	S	V	Y	A	T	H	S	R	L	H	N	S	G	H	G	.	.	.	.	.	.	.	.	.	.	.	.	E	L	E	T	T	A	L	C	H	F	T	L	E	N
Template Known Secondary structure					G	.	.	G	G	G	S											T	T														.												S	S		T	T		T	.	.	.	.	.	.	.	.	.	.	.	.	T			S									G	G
Template Predicted Secondary structure						.	.																														.																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.													.	.	.	.	.	.	.	220	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		G	G	I	L	W	L	E	T	S	F	A	L	N	I	R	.	.	E	Q	S	I	M	N	V	S	F	C	G	D	K	A	G	A	T	L	F	P	A	H	I	Y	T	D	N	N	G	E	L	M	T	L	M	Q	R	E	I	A	D	D	N	R	H	L	R	S	M	E	A	F	I	N	H	V	Q	G	K	P	V	M	I
Query Conservation																	.	.
Alig confidence																	.	.																																			.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		E	V	F	A	S	L	S	I	D	Y	L	R	P	Q	G	A	P	T	H	D	D	D	R	X	R	I	V	G	T	R	G	I	V	E	V	I	N	E	R	V	F	L	T	D	E	K	G	H	R	E	V	.	.	.	.	.	.	P	L	V	E	K	G	Q	I	F	E	D	F	L	R	E	I	R	G	Q	G	K	C	X
Template Known Secondary structure		G									S	B			T	T	S	S	S	S	B									S	S							T	T							T	T						.	.	.	.	.	.																	T	T	S	S			S
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.							.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	E	Q	G	Y	I	I	Q	Q	L	V	A	A	L	Y	Q	S	A	E	T	G	T	R	V	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	P	E	D	S	I	L	T	T	E	I	A	L	K	A	R	L	S	A	D	T	G	Q	I	V	L	I
Template Known Secondary structure		S																						T
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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