Phyre 2 alignment of P77503 with c2ixaA

Job Description P77503
Confidence 100.00% Date Thu Jan 5 12:30:02 GMT 2012

Rank 33 Aligned Residues 336

% Identity 20% Template c2ixaA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase

Resolution 2.3 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.										.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.
Query Sequence	S	P	L	R	V	A	I	I	G	A	G	Q	V	A	D	K	V	H	A	S	Y	Y	C	T	R	N	D	L	E	L	V	A	V	C	D	S	R	L	S	Q	A	Q	A	L	A	E	K	Y	G	N	.	.	.	.	.	.	.	.	.	A	S	V	W	D	D	P	Q	A	M	L	L	A	V	K	P	D	V	V	S	V
Query Conservation																																																			.	.	.	.	.	.	.	.	.
Alig confidence																	.																																		.	.	.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence	K	K	V	R	I	A	F	I	A	V	G	L	R	G	Q	T	.	H	V	E	N	M	A	R	R	D	D	V	E	I	V	A	F	A	D	P	D	P	Y	M	V	G	R	A	Q	E	I	L	K	K	N	G	K	K	P	A	K	V	F	G	N	G	N	D	D	Y	K	N	M	L	K	D	K	N	I	D	A	V	F	V
Template Known Secondary structure											S						.							T		T	T									S															T	T									S	S	T	T	T					T	T		T	T
Template Predicted Secondary structure																	.
Template SS confidence
	19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	C	S	P	N	R	F	H	Y	E	H	T	L	M	A	L	E	A	G	C	H	V	M	C	E	K	P	P	A	M	T	P	E	Q	A	R	E	M	C	D	T	A	R	K	L	G	K	V	L	A	Y	D	F	H	H	R	F	A	L	D	T	Q	Q	L	R	E	Q	V	T	N	G	V	L	G	E	I	Y	V	T	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	S	P	W	E	W	H	H	E	H	G	V	A	A	M	K	A	G	K	I	V	G	M	E	V	S	G	A	I	T	L	E	E	C	W	D	Y	V	K	V	S	E	Q	T	G	V	P	L	M	A	L	E	N	V	C	Y	R	R	D	V	M	A	I	L	N	M	V	R	K	G	M	F	G	E	L	V	H	G	T	G
Template Known Secondary structure				G	G	G											T	T											S	S																							G	G	G	G													T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
	98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																																	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	R	A	L	R	R	C	G	V	P	G	W	G	V	F	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	L	Q	G	G	G	P	L	I	D	I	G	I	H	M	L	D	A	A	M	Y	V	L	G	F	P	A	V	K	S	V
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template Conservation																																																																																.
Template Sequence	G	Y	Q	H	D	L	R	P	V	L	F	N	S	G	I	N	G	K	N	G	D	G	V	E	F	G	E	K	A	F	S	E	A	K	W	R	T	N	H	Y	K	N	R	N	G	E	L	Y	P	T	H	G	V	G	P	L	H	T	M	M	D	I	N	R	G	N	R	L	L	R	L	S	S	F	A	S	K	A	R	.
Template Known Secondary structure			B									B		S		T	T			S	S			B		S	T	T	S		G	G	G	G	T										S																T	B	T	T	T	B														.
Template Predicted Secondary structure																																																																																.
Template SS confidence
	178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

	207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	A	H	S	F	Q	K	I	G	T	Q	K	S	C	G	Q	F	G	E	W	D	P	A	T	Y	S	V	E	D	S	L	F	G	T	I	E	F	H	N	G	G	I	L	W	L	E	T	S	F	A	L	N	I	R	E	Q	S	I	M	N	V	S	F	C	G	D	K	A	G	A	T	L	F	P	A	H	I	Y	T	D
Query Conservation
Alig confidence	.	.	.	.																																																	.	.
Template Conservation	.	.	.	.																																																	.	.
Template Sequence	.	.	.	.	G	L	H	K	Y	I	V	D	K	G	G	E	S	H	P	N	A	K	V	E	W	K	Q	G	D	I	V	T	T	Q	I	Q	C	H	N	G	E	T	I	V	L	T	H	D	T	S	L	Q	.	.	R	P	Y	N	L	G	F	K	V	Q	G	T	E	G	L	W	E	D	F	G	W	G	E	A	A	Q
Template Known Secondary structure	.	.	.	.												T	T	S	G	G	G	G					S		S									T	T	S								B		S	S		.	.												S	S							S	S	S		T	T	S
Template Predicted Secondary structure	.	.	.	.																																																	.	.
Template SS confidence
					257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

	287	.	.	290	.	.	.	.	.	.	.	.	.																												300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	N	N	G	E	L	M	T	L	M	Q	R	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	D	N	R	H	L	R	S	M	E	A	F	I	N	H	V	Q	G	K	P	V	M	I	A	D	A	E	Q	G	Y	I	I	Q	Q	L	V	A	A	L
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	G	F	I	Y	F	E	K	I	M	N	H	S	H	R	W	D	S	S	E	K	W	I	K	E	Y	D	H	P	M	W	K	K	H	E	Q	K	A	V	G	A	G	H	G	G	M	D	Y	F	L	D	N	T	F	V	E	C	I	K	R	N	E	A	F	P	L	D	V	Y	D	L	A	T	W	Y	S	I	T	P	L	S
Template Known Secondary structure						T	T	T	T	T	T			S				S							T													S	T	T	S			T																T				S	S
Template Predicted Secondary structure
Template SS confidence
	331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

	340	.	.	.	.	.	.		.	.	.	350	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence	Y	Q	S	A	E	T	G	.	T	R	V	E	L
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence	E	K	S	I	A	E	N	G	A	V	Q	E	I
Template Known Secondary structure						T	T	T
Template Predicted Secondary structure
Template SS confidence
	411	.	.	.	.	.	.	.	.	420	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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