Job Description P15043 Confidence 81.26% Date Thu Jan 5 11:34:25 GMT 2012 Rank 315 Aligned Residues 257 % Identity 17% Template d1jx6a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.50

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		64	.	.	.	.	.	70	.	.	.	.								.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure													.	.	.	.	.	.	.																							.	.	.	.
Query SS confidence													.	.	.	.	.	.	.																							.	.	.	.
Query Sequence		L	N	G	L	T	V	V	V	S	P	L	.	.	.	.	.	.	.	I	S	L	M	K	D	Q	V	D	Q	L	Q	A	N	G	V	A	A	A	C	L	N	.	.	.	.	S	T	Q	T	R	E	Q	Q	L	E	V	M	T	G	C	R	T	G	Q	I	R	L	L	Y	I	A	P	E	R	L	M	L	D	N	F	L
Query Conservation													.	.	.	.	.	.	.																							.	.	.	.
Alig confidence													.	.	.	.	.	.	.																							.	.	.	.
Template Conservation
Template Sequence		R	P	I	K	I	S	V	V	Y	P	G	Q	Q	V	S	D	Y	W	V	R	N	I	A	S	F	E	K	R	L	Y	K	L	N	I	N	Y	Q	L	N	Q	V	F	T	R	P	N	A	D	I	K	Q	Q	S	L	S	L	M	E	A	L	K	S	K	S	D	Y	L	I	F	T	L	D	T	T	R	H	R	K	F	V
Template Known Secondary structure		S												S	S																		T	T												T	T																T	T		S							S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.											.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.
Query Sequence		E	H	L	A	H	W	N	P	V	L	L	A	V	.	.	.	.	.	.	.	.	.	.	D	E	A	H	C	I	S	Q	W	G	H	D	F	R	P	E	Y	A	A	L	G	Q	L	R	Q	R	F	P	T	L	P	F	M	A	L	T	A	T	A	D	D	T	T	R	Q	D	I	V	R	L	L	G	L	N	D	P	L
Query Conservation															.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.																																															.
Template Conservation																																																																							.
Template Sequence		E	H	V	L	D	S	T	N	T	K	L	I	L	Q	N	I	T	T	P	V	R	E	W	D	K	H	Q	P	F	L	Y	V	G	F	D	H	A	E	G	S	R	E	L	A	T	E	F	G	K	F	F	P	K	H	T	Y	Y	S	V	L	Y	F	S	E	G	Y	I	S	D	.	V	R	G	D	T	F	I	H	Q	V
Template Known Secondary structure									S							T			S		B	G	G	G	T	T	S			S																						S		T	T									S	T	T					.
Template Predicted Secondary structure																																																																							.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		I	Q	I	S	S	F	D	R	P	N	I	R	Y	M	L	M	E	K	F	K	P	L	D	Q	L	M	R	Y	V	Q	E	Q	R	G	K	S	G	I	I	Y	C	N	S	R	A	K	V	E	D	T	A	A	R	L	Q	S	K	G	I	.	S	A	A	A	Y	H	A	G	L	E	N	N	V	R	A	D	V	Q	E	K
Query Conservation																																																													.
Alig confidence																																							.																						.																		.	.	.
Template Conservation																																							.																																								.	.	.
Template Sequence		N	R	D	N	N	F	E	L	Q	S	A	Y	Y	T	K	A	T	K	Q	S	G	Y	D	A	A	K	A	S	L	A	K	H	P	D	V	D	F	.	I	Y	A	C	S	T	D	V	A	L	G	A	V	D	A	L	A	E	L	G	R	E	D	I	M	I	N	G	W	G	G	G	S	A	E	L	D	A	I	.	.	.
Template Known Secondary structure																	S	S																			S		.				S	S															T		T	T	S			B		S	B										.	.	.
Template Predicted Secondary structure																																							.																																								.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.														.	300	.	.	.						.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.
Query Sequence		F	Q	R	D	D	L	Q	I	V	V	A	T	V	A	F	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	N	K	P	.	.	.	.	.	N	V	R	F	V	V	H	F	D	I	P	R	N	I	E	S	Y	Y	Q	E	T	G	R
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.
Alig confidence		.																	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.
Template Conservation		.
Template Sequence		.	Q	K	G	D	L	D	I	T	V	M	R	M	N	D	D	T	G	I	A	M	A	E	A	I	K	W	D	L	E	D	K	P	V	P	T	V	Y	S	G	D	F	E	I	V	T	K	A	D	S	P	E	R	I	E	A	L	K	K	R	A	F	R
Template Known Secondary structure		.			T	S	S								T																T	T					S											T	T	S													T	T
Template Predicted Secondary structure		.
Template SS confidence
			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions