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Job DescriptionP15043
Confidence100.00%DateThu Jan 5 11:34:25 GMT 2012
Rank16Aligned Residues337
% Identity16%Templatec3pexA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase dbp5; PDBTitle: s. cerevisiae dbp5 l327v bound to gle1 h337r and ip6
Resolution4.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40 .........50.........60... ......70.....
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Query Sequence  AEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSG. . RDCLVVMPTGGGKSLCYQIPALL. . . . . . LNGLTVVVSPLI
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Template Sequence  FDELGLAPELLKGIYA. MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSR
Template Known Secondary structure  TTTTT

.TT

S

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   94.....100......... 110.........120.........130.........140.........150.........160.........170..
 
   76...80........ .90.........100.........110.........120.........130.........140.........150.
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Query Sequence  SLMKDQVDQLQAN. . . . GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI
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Template Sequence  ELARQTLEVVQEMGKFTKITSQLIVPDSF. . . . . . . . EKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNM
Template Known Secondary structure  TTSS


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   173......180.........190.........200. ........210.........220.........230.........240....
 
   152.......160.........170.........180.........190.........200.........210.........220.........230.
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Query Sequence  SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYV
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Template Sequence  LDQQGLGDQC. . . IRVKRFLPKDTQLVLFSATFADAVRQ. . YAKKIVPNANTLELQDAIKQLYMDCKNEADKFDVLTELY
Template Known Secondary structure  STT...TS
TTS
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   245....250.... .....260.........270.........280 .........290.........300.........310.........
 
   232.......240.........250.........260.........270.........280.........290.........300.........310.
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Query Sequence  QEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHF
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Template Sequence  GVMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNY
Template Known Secondary structure  TSS

S
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TTT


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   326...330.........340.........350.........360.........370.........380.........390.........400.....
 
   312... ....320.........330.........340.........350....
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Query Sequence  DIPR. . . . . . NIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE
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Template Sequence  DLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQK
Template Known Secondary structure  S

B
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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