Phyre 2 alignment of P15043 with c3oiyB

Job Description P15043
Confidence 100.00% Date Thu Jan 5 11:34:25 GMT 2012

Rank 30 Aligned Residues 330

% Identity 17% Template c3oiyB_

PDB info PDB header:isomerase Chain: B: PDB Molecule:reverse gyrase helicase domain; PDBTitle: helicase domain of reverse gyrase from thermotoga maritima

Resolution 2.35 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence	G	A	K	Q	V	L	Q	E	T	F	G	Y	Q	Q	F	R	P	G	Q	E	E	I	I	D	T	V	L	S	G	R	D	C	L	V	V	M	P	T	G	G	G	K	S	L	C	Y	Q	I	P	A	L	L	.	.	.	L	N	G	L	T	V	V	V	S	P	L	I	S	L	M	K	D	Q	V	D	Q	L	Q	A	N
Query Conservation																																																					.	.	.
Alig confidence														.																																							.	.	.
Template Conservation														.
Template Sequence	D	F	R	S	F	F	K	K	K	F	G	K	D	.	L	T	G	Y	Q	R	L	W	A	K	R	I	V	Q	G	K	S	F	T	M	V	A	P	T	G	V	G	K	T	T	F	G	M	M	T	A	L	W	L	A	R	K	G	K	K	S	A	L	V	F	P	T	V	T	L	V	K	Q	T	L	E	R	L	Q	K	L
Template Known Secondary structure											S	S		.													T	T	T								S	S		T	T														T	T	T								S	S
Template Predicted Secondary structure														.
Template SS confidence
	66	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.

	89				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence	G	.	.	.	V	A	A	A	C	L	N	S	T	Q	T	R	E	Q	Q	L	E	V	M	T	G	C	R	T	G	Q	I	R	L	L	Y	I	A	P	E	R	L	M	L	D	N	F	L	E	H	L	A	H	W	N	P	V	L	L	A	V	D	E	A	H	C	I	S	Q	W	G	H	D	F	R	P	E	Y	A	A	L
Query Conservation		.	.	.
Alig confidence		.	.	.																																							.	.
Template Conservation																																											.	.
Template Sequence	A	D	E	K	V	K	I	F	G	F	Y	S	S	M	K	K	E	E	K	E	K	F	E	K	S	F	E	E	D	D	Y	H	I	L	V	F	S	T	Q	F	V	S	.	.	K	N	R	E	K	L	S	Q	K	R	F	D	F	V	F	V	D	D	V	D	A	V	L	K	A	S	R	N	I	D	T	L	L	M	M	V
Template Known Secondary structure			S	S								T	T	S															T			S											.	.							T	T				S					S							T	S											T
Template Predicted Secondary structure																																											.	.
Template SS confidence
	145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

	166	.	.	.	170	.																				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence	G	Q	L	R	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	T	L	P	F	M	A	L	T	A	T	A	D	D	T	.	T	R	Q	D	I	V	R	L	L	G	L	N	D	P	L	I	Q	I	S	S	F	D	R	P	N	I	R	Y	M	L	M	E	K	F	K	P	L	D
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence	G	I	P	E	E	I	I	R	K	A	F	S	T	I	K	Q	G	K	I	Y	E	R	P	K	N	L	K	P	G	I	L	V	V	S	S	A	T	A	K	P	R	G	I	R	P	L	L	F	R	D	L	L	N	F	T	V	G	R	L	V	S	V	A	R	N	I	T	H	V	R	I	S	S	R	S	K	E	K	L	V
Template Known Secondary structure	T															T	T							T	T										S	S							S	T	T							S	S																			S	S
Template Predicted Secondary structure
Template SS confidence
	223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

	226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	L	M	R	Y	V	Q	E	Q	R	G	K	S	G	I	I	Y	C	N	S	R	A	K	V	E	D	T	A	A	R	L	Q	S	K	G	I	S	A	A	A	Y	H	A	G	L	E	N	N	V	R	A	D	V	Q	E	K	F	Q	R	D	D	L	Q	I	V	V	A	T	V	A	F	G	M	G	I	N	K	P	N	V
Query Conservation
Alig confidence							.	.	.	.																																			.	.	.	.	.																														.
Template Conservation							.	.	.	.																																			.	.	.	.	.																														.
Template Sequence	E	L	L	E	I	F	.	.	.	.	R	D	G	I	L	I	F	A	Q	T	E	E	E	G	K	E	L	Y	E	Y	L	K	R	F	K	F	N	V	G	E	T	W	S	E	.	.	.	.	.	F	E	K	N	F	E	D	F	K	V	G	K	I	N	I	L	I	G	V	Q	A	Y	Y	V	D	L	P	E	R	.	I
Template Known Secondary structure							.	.	.	.		S	S						S	S														T	T						S	S	S		.	.	.	.	.										T	T	S		S						T	T						T	T	T	.
Template Predicted Secondary structure							.	.	.	.																																			.	.	.	.	.																														.
Template SS confidence
	303	.	.	.	.	.					.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.						.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.

	306	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure										.	.																.	.
Query SS confidence										.	.																.	.
Query Sequence	R	F	V	V	H	F	D	I	P	.	.	R	N	I	E	S	Y	Y	Q	E	T	G	R	A	G	R	.	.	D	G	L	P	A	E	A	M	L	F	Y	D	P	A	D	M	A	W	L	R	R	C	L	E	E
Query Conservation										.	.																.	.
Alig confidence										.	.																.	.
Template Conservation
Template Sequence	K	Y	V	I	F	W	G	T	P	S	G	P	D	V	Y	T	Y	I	Q	A	S	G	R	S	S	R	I	L	N	G	V	L	V	K	G	V	S	V	I	F	E	E	D	E	E	I	F	E	S	L	K	T	R
Template Known Secondary structure							S			T	T	T											T	T					T	T
Template Predicted Secondary structure
Template SS confidence
	379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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