Job Description P15043 Confidence 100.00% Date Thu Jan 5 11:34:25 GMT 2012 Rank 27 Aligned Residues 327 % Identity 17% Template c3kx2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna PDBTitle: crystal structure of prp43p in complex with adp Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.							.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.
Query Sequence		M	A	Q	A	E	V	L	N	L	E	S	G	A	K	Q	V	L	Q	E	T	F	G	Y	Q	Q	F	R	P	G	Q	E	E	I	I	D	T	V	L	S	G	R	D	C	L	V	V	M	P	T	G	G	G	K	S	L	C	Y	Q	I	P	A	L	L	.	.	.	.	.	.	L	N	G	L	T	V	V	V	S	P	L
Query Conservation																																																																	.	.	.	.	.	.
Alig confidence																										.																																							.	.	.	.	.	.
Template Conservation																										.
Template Sequence		I	N	P	F	T	G	R	E	F	T	P	K	Y	V	D	I	L	K	I	R	R	E	L	P	.	V	H	A	Q	R	D	E	F	L	K	L	Y	Q	N	N	Q	I	M	V	F	V	G	E	T	G	S	G	K	T	T	Q	I	P	Q	F	V	L	F	D	E	M	P	H	L	E	N	T	Q	V	A	C	T	Q	P	R
Template Known Secondary structure		B		T	T	S	S	S	B													T	T	S	G	.	G	G	G	G												S								T	T	S	S															G	G	G	G	T								S
Template Predicted Secondary structure																										.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		I	S	L	M	K	D	Q	V	D	Q	L	Q	A	.	.	.	.	.	N	G	V	A	A	A	C	L	N	S	T	Q	T	R	E	Q	Q	L	E	V	M	T	G	C	R	T	G	Q	I	R	L	L	Y	I	A	P	E	R	L	M	L	D	N	F	L	E	H	L	A	H	W	N	P	V	L	L	A	V	D	E	A	H
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.											.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																														.	.	.	.	.	.	.	.	.	.																													.
Template Sequence		R	V	A	A	M	S	V	A	Q	R	V	A	E	E	M	D	V	K	L	G	E	E	V	G	Y	S	I	R	.	.	.	.	.	.	.	.	.	.	F	E	N	K	T	S	N	K	T	I	L	K	Y	M	T	D	G	M	L	L	R	E	A	M	E	D	H	D	.	L	S	R	Y	S	C	I	I	L	D	E	A	H
Template Known Secondary structure																T	T			B	T	T	T						T	.	.	.	.	.	.	.	.	.	.	T						T	T																			T	T	.		T	T									G	G
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.																													.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.											.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		C	I	S	Q	W	G	H	D	F	R	P	E	Y	A	A	L	G	Q	L	R	Q	R	F	P	T	L	P	F	M	A	L	T	A	T	A	D	D	T	T	R	Q	D	I	V	R	L	L	G	L	N	D	P	L	I	Q	I	S	S	F	D	R	P	N	I	R	Y	M	L	M	E	K	F	K	.	.	.	.	P	L	D
Query Conservation																																																																											.	.	.	.
Alig confidence			.												.	.																							.	.	.																																		.	.	.	.
Template Conservation			.												.	.																							.	.	.
Template Sequence		E	.	R	T	L	A	T	D	I	L	M	G	L	.	.	L	K	Q	V	V	K	R	R	P	D	L	K	I	I	I	M	S	A	T	L	D	A	.	.	.	E	K	F	Q	R	Y	F	N	D	A	P	L	L	A	V	P	G	R	T	Y	P	V	E	L	Y	Y	T	P	E	F	Q	R	D	Y	L	D	S	A	I	R
Template Known Secondary structure		G	.												.	.									T	T								S	S	S			.	.	.							T	T	S																			S	S			S
Template Predicted Secondary structure			.												.	.																							.	.	.
Template SS confidence
		219		220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.				.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260												.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.						.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query Sequence		Q	L	M	R	Y	V	Q	E	Q	R	G	K	S	G	I	I	Y	C	N	S	R	A	K	V	E	D	T	A	A	R	L	Q	S	K	G	.	.	.	.	.	.	.	.	.	.	.	I	S	A	A	A	Y	H	A	G	L	E	N	N	V	R	A	D	V	Q	E	K	F	Q	R	D	D	L	Q	.	.	.	.	.	I
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation
Template Sequence		T	V	L	Q	I	H	A	T	E	E	A	G	D	I	L	L	F	L	T	G	E	D	E	I	E	D	A	V	R	K	I	S	L	E	G	D	Q	L	V	R	E	E	G	C	G	P	L	S	V	Y	P	L	Y	G	S	L	P	P	H	Q	Q	Q	R	I	F	E	P	A	P	E	S	H	N	G	R	P	G	R	K	V
Template Known Secondary structure										S		S								S	S																																		T	T							G	G	G	G	S						S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.																			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	A	T	V	A	F	G	M	G	I	N	K	P	N	V	R	F	V	V	H	F	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	N	I	E	S	Y	Y	Q	E	T	G	R	A	G	R	D	G	L	P	A	E	A	M	L	F	Y	D	P	A	D	M	A
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																																														.
Template Sequence		V	I	S	T	N	I	A	E	T	S	L	T	I	D	G	I	V	Y	V	V	D	P	G	F	S	K	Q	K	V	Y	N	P	R	I	R	V	E	S	L	L	V	S	P	I	S	K	A	S	A	Q	Q	R	A	G	R	A	G	R	T	R	.	P	G	K	C	F	R	L	Y	T	E	E	A	F	Q
Template Known Secondary structure						T					S				T	T																	T	T	T	T																				G	G	G	S	S	S	.	S						S	S
Template Predicted Secondary structure																																																														.
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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