Job Description P15043 Confidence 99.90% Date Thu Jan 5 11:34:25 GMT 2012 Rank 100 Aligned Residues 189 % Identity 14% Template c3fmpD_ PDB info PDB header:oncoprotein/hydrolase Chain: D: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of the nucleoporin nup214 in complex with the dead-2 box helicase ddx19 Resolution 3.19 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.							.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																						.	.																										.	.	.	.	.	.
Query SS confidence																																						.	.																										.	.	.	.	.	.
Query Sequence		A	E	V	L	N	L	E	S	G	A	K	Q	V	L	Q	E	T	F	G	Y	Q	Q	F	R	P	G	Q	E	E	I	I	D	T	V	L	S	.	.	G	R	D	C	L	V	V	M	P	T	G	G	G	K	S	L	C	Y	Q	I	P	A	L	L	L	.	.	.	.	.	.	N	G	L	T	V	V	V	S	P	L	I
Query Conservation																																						.	.																										.	.	.	.	.	.
Alig confidence																			.																			.	.																										.	.	.	.	.	.
Template Conservation																			.
Template Sequence		F	E	E	L	R	L	K	P	Q	L	L	Q	G	V	Y	A	M	.	G	F	N	R	P	S	K	I	Q	E	N	A	L	P	L	M	L	A	E	P	P	Q	N	L	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	V	L	A	M	L	S	Q	V	E	P	A	N	K	Y	P	Q	C	L	C	L	S	P	T	Y
Template Known Secondary structure		S	T	T	T	T												T	.	T			S													T	S	S	S										S	S	S	S											T	T			T	T	S		S								S	S
Template Predicted Secondary structure																			.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.						.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.																																												.
Query SS confidence															.	.	.	.	.																																												.
Query Sequence		S	L	M	K	D	Q	V	D	Q	L	Q	A	N	.	.	.	.	.	G	V	A	A	A	C	L	N	S	T	Q	T	R	E	Q	Q	L	E	V	M	T	G	C	R	T	G	Q	I	R	L	L	Y	I	A	P	E	R	L	M	L	D	N	F	.	L	E	H	L	A	H	W	N	P	V	L	L	A	V	D	E	A	H
Query Conservation															.	.	.	.	.																																												.
Alig confidence															.	.	.	.	.													.	.	.	.	.	.	.																									.
Template Conservation																																.	.	.	.	.	.	.
Template Sequence		E	L	A	L	Q	T	G	K	V	I	E	Q	M	G	K	F	Y	P	E	L	K	L	A	Y	A	V	R	G	N	K	.	.	.	.	.	.	.	L	E	R	G	Q	K	I	S	E	Q	I	V	I	G	T	P	G	T	V	L	D	W	C	S	K	L	K	F	I	D	P	K	K	I	K	V	F	V	L	D	E	A	D
Template Known Secondary structure																T	T	S	T	T							S	T	T			.	.	.	.	.	.	.			T	T						S														T	T	S					G	G	G
Template Predicted Secondary structure																																.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.								.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	I	S	Q	W	G	H	D	F	R	P	E	Y	A	A	L	G	Q	L	R	Q	R	F	P	T	L	P	F	M	A	L	T	A	T	A	D	D	T	T	R	Q	D	I	V	R	L	L	G	L	N	D	P	L	I	Q	I
Query Conservation
Alig confidence									.									.	.																														.	.
Template Conservation									.									.	.																														.	.
Template Sequence		V	M	I	A	T	Q	G	.	H	Q	D	Q	S	I	R	I	.	.	Q	R	M	L	P	R	N	C	Q	M	L	L	F	S	A	T	F	E	D	S	V	W	K	F	A	Q	K	V	V	.	.	P	D	P	N	V	I	K
Template Known Secondary structure					T	S	T	T	.									.	.		T	T	S		T	T	S							S														S	.	.	S	S
Template Predicted Secondary structure									.									.	.																														.	.
Template SS confidence
		246	.	.	.	250	.	.		.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions