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Job DescriptionP15043
Confidence86.40%DateThu Jan 5 11:34:25 GMT 2012
Rank256Aligned Residues116
% Identity13%Templatec2z4rB_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa
Resolution3.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40 .........50.........60.........70.........80........ .90.........100....
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Query Sequence  EEIIDTVLSG. . . . RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQAN. . GVAAACLNSTQTREQQ
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Template Sequence  YHAALEVAKHPGRYNPLFIYGGVGLGKT. . . . . . . . . . . . . . . . . . . . . HLLQSIGNYVVQNEPDLRVMYITSEKFLNDL
Template Known Secondary structure  STTTS


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   117..120.........130.........140.... .....150.........160.........170.....
 
   105....110.........120.........130.........140.........150.........160.........170.........180....
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Query Sequence  LEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATA
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Template Sequence  VDSMKEG. . . . . . . . . . . . . . . . KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHD. . . SGKQIVICSDR
Template Known Secondary structure  TS................
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   176...180.. .......190.........200.........210.........220..... ....230......
 
   185.
Predicted Secondary structure 
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Query Sequence  DD
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Template Sequence  EP
Template Known Secondary structure 
T
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   237.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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