Job Description P15043 Confidence 100.00% Date Thu Jan 5 11:34:25 GMT 2012 Rank 21 Aligned Residues 325 % Identity 20% Template c2z0mA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:337aa long hypothetical atp-dependent rna PDBTitle: crystal structure of hypothetical atp-dependent rna2 helicase from sulfolobus tokodaii Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	S	G	A	K	Q	V	L	Q	E	T	F	G	Y	Q	Q	F	R	P	G	Q	E	E	I	I	D	T	V	L	S	G	R	D	C	L	V	V	M	P	T	G	G	G	K	S	L	C	Y	Q	I	P	A	L	L	L	N	G	L	T	V	V	V	S	P	L	I	S	L	M	K	D	Q	V	D	Q	L	Q	A	N
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		M	N	E	K	I	E	Q	A	I	R	E	.	M	G	F	K	N	F	T	E	V	Q	S	K	T	I	P	L	M	L	Q	G	K	N	V	V	V	R	A	K	T	G	S	G	K	T	A	A	Y	A	I	P	I	L	E	L	G	M	K	S	L	V	V	T	P	T	R	E	L	T	R	Q	V	A	S	H	I	R	D	I
Template Known Secondary structure													.	T	T			S														T	T									T	T	S	S													T								S	S
Template Predicted Secondary structure													.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		89					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure			.	.	.	.
Query SS confidence			.	.	.	.
Query Sequence		G	.	.	.	.	V	A	A	A	C	L	N	S	T	Q	T	R	E	Q	Q	L	E	V	M	T	G	C	R	T	G	Q	I	R	L	L	Y	I	A	P	E	R	L	M	L	D	N	F	L	E	H	L	A	H	W	N	P	V	L	L	A	V	D	E	A	H	C	I	S	Q	W	G	H	D	F	R	P	E	Y	A	A
Query Conservation			.	.	.	.
Alig confidence			.	.	.	.																					.	.	.	.	.																																											.	.	.	.	.
Template Conservation																											.	.	.	.	.																																											.	.	.	.	.
Template Sequence		G	R	Y	M	D	T	K	V	A	E	V	Y	G	G	M	P	Y	K	A	Q	I	N	R	V	R	.	.	.	.	.	N	A	D	I	V	V	A	T	P	G	R	L	L	D	L	W	S	K	G	V	I	D	L	S	S	F	E	I	V	I	I	D	E	A	D	L	M	F	E	M	G	F	.	.	.	.	.	I	D	D
Template Known Secondary structure		T	T	T	S									T	T	S										T	.	.	.	.	.	T		S															T	T	S			G	G	G		S						S							T	T		.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.																																											.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.						.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	Q	L	R	Q	R	F	P	T	L	P	F	M	A	L	T	A	T	A	D	D	T	T	R	Q	D	I	V	R	L	L	G	L	N	D	P	L	I	Q	I	S	S	F	D	R	P	N	I	R	Y	M	L	M	E	K	F	K	P	L	D	Q	L	M	R	Y	V	Q	E	Q	R	G	K	S	G	I	I	Y	C	N
Query Conservation
Alig confidence																																		.
Template Conservation																																		.
Template Sequence		I	K	I	I	L	A	Q	T	S	N	R	K	I	T	G	L	F	S	A	T	I	P	E	E	I	R	K	V	V	K	D	F	.	I	T	N	Y	E	E	I	E	A	C	I	G	L	A	N	V	E	H	K	F	V	H	V	K	D	D	W	R	S	K	V	Q	A	L	R	E	N	K	D	K	G	V	I	V	F	V	R
Template Known Secondary structure										T	T		S							S														.	S		S							S	G	G	G	G	G									S	S	S	S									T				S	S						S
Template Predicted Secondary structure																																		.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	A	K	V	E	D	T	A	A	R	L	Q	S	K	G	I	S	A	A	A	Y	H	A	G	L	E	N	N	V	R	A	D	V	Q	E	K	F	Q	R	D	D	L	Q	I	V	V	A	T	V	A	F	G	M	G	I	N	K	P	N	V	R	F	V	V	H	F	D	I	P	R	N	I	E	S	Y	Y	Q	E	T
Query Conservation
Alig confidence														.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		T	R	N	R	V	A	K	L	V	R	L	F	.	.	.	.	D	N	A	I	E	L	R	G	D	L	P	Q	S	V	R	N	R	N	I	D	A	F	R	E	G	E	Y	D	M	L	I	T	T	D	V	A	S	R	G	L	D	I	P	L	V	E	K	V	I	N	F	D	A	P	Q	D	L	R	T	Y	I	H	R	I
Template Known Secondary structure											T	T		.	.	.	.	T	T						T	T	S														T	T	S		S										T	T						B	S					S	S			S	S
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	A	G	R	D	G	L	P	A	E	A	M	L	F	Y	D	P	A	D	M	A	W	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	T	G	R	M	G	R	K	G	E	A	I	T	F	I	L	N	E	Y	W	L	E	K	E
Template Known Secondary structure		T	T	B		G	G	G										S	S
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions