Job Description P15043 Confidence 100.00% Date Thu Jan 5 11:34:25 GMT 2012 Rank 42 Aligned Residues 264 % Identity 18% Template c2wv9A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus Resolution 2.75 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		S	G	R	D	C	L	V	V	M	P	T	G	G	G	K	S	L	C	Y	Q	I	P	A	L	L	.	.	.	.	L	N	G	L	T	V	V	V	S	P	L	I	S	L	M	K	D	Q	V	D	Q	L	Q	A	N	G	V	A	A	A	C	L	N	S	T	Q	T	R	E	Q	Q	L	E	V	M	T	G	C	R	T	G
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	R	Q	L	T	V	L	D	L	H	P	G	A	G	K	T	R	R	I	L	P	Q	I	I	K	D	A	I	Q	K	R	L	R	T	A	V	L	A	P	T	R	V	V	A	A	E	M	A	E	A	L	R	G	L	P	V	R	Y	L	T	P	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	S	G
Template Known Secondary structure		T	T									T	T	T	T	T	T	T	T												T	T								S	S											T	T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.															.	250	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	R	L	L	Y	I	A	P	E	R	L	M	L	D	N	F	L	E	H	L	A	H	W	N	P	V	L	L	A	V	D	E	A	H	C	I	S	Q	W	G	H	D	F	R	P	E	Y	A	A	L	G	Q	L	R	Q	R	F	P	T	L	P	F	M	A	L	T	A	T	A	D	D	T	T	R	Q	D	I	V	R
Query Conservation
Alig confidence																					.																															.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.																															.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	E	I	V	D	V	M	C	H	A	T	L	T	H	R	L	M	S	P	.	L	R	V	P	N	Y	N	L	F	V	M	D	E	A	H	F	T	D	P	A	S	I	A	A	R	G	Y	I	A	T	.	.	.	.	R	V	E	A	G	E	A	A	A	I	F	M	T	A	T	P	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																			S	S	.	S						S						S	T	T																.	.	.	.				T	T	S								S	S		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.																															.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.					.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	G	L	N	D	P	L	I	Q	I	S	S	F	D	R	P	N	I	R	Y	M	L	M	E	K	F	K	P	L	D	Q	L	M	R	Y	V	Q	E	Q	R	G	K	S	G	I	I	Y	C	N	S	R	A	K	V	E	D	T	A	A	R	L	Q	S	K	G	I	S	A	A	A	Y	H	A	G	L	E	N	N	V
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	P	G	T	S	D	P	F	P	D	T	N	S	P	V	H	D	V	S	S	E	I	P	D	R	A	W	S	S	G	F	E	W	I	T	D	Y	A	G	K	T	V	W	F	V	A	S	V	K	M	S	N	E	I	A	Q	C	L	Q	R	A	G	K	R	V	I	Q	L	N	R	K	S	Y	D	T	E
Template Known Secondary structure		.	.	.	.	.	T	T				S	S				S	S											S	S			S	S							S			S							S	S													T	T	T								S	S	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.																					.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	D	V	Q	E	K	F	Q	R	D	D	L	Q	I	V	V	A	T	V	A	F	G	M	G	I	N	K	P	N	V	R	F	V	V	H	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	R	N	I	E	S	Y	Y	Q	E	T	G	R	A	G	R	D	G	L	P	A
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.																							.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.																							.
Template Sequence		Y	P	K	.	.	.	.	C	K	N	G	D	W	D	F	V	I	T	T	D	I	S	E	M	G	A	N	F	G	.	A	S	R	V	I	D	C	R	K	S	V	K	P	T	I	L	D	E	G	E	G	R	V	I	L	S	V	P	S	A	I	T	S	A	S	A	A	Q	R	R	G	R	V	G	R	N	P	S	Q	I
Template Known Secondary structure		G	G	G	.	.	.	.	G	G	T				S						G	G	G	G	T	T					.		S																S	T	T								S													T	T	S	S			S	S
Template Predicted Secondary structure					.	.	.	.																							.
Template SS confidence
		395	.	.					.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
		335	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	M	L	F	Y	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	E	Y	H	Y	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions