Job Description P15043 Confidence 99.97% Date Thu Jan 5 11:34:25 GMT 2012 Rank 53 Aligned Residues 314 % Identity 17% Template c2w74B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:type i restriction enzyme ecor124ii r protein; PDBTitle: mutant (k220r) of the hsdr subunit of the ecor124i2 restriction enzyme in complex with atp Resolution 2.74 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.							.	.	.	.	30	.	.	.	.	.	.	.	.	.															40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.
Predicted Secondary structure																	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query Sequence		S	G	A	K	Q	V	L	Q	E	T	F	G	Y	Q	Q	.	.	.	.	.	.	F	R	P	G	Q	E	E	I	I	D	T	V	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	D	C	L	V	V	M	P	T	G	G	G	K	S	L	C	Y	Q	I	P	A	L	L	.	.	.	.	.	L	N
Query Conservation																	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Alig confidence																	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation
Template Sequence		H	T	L	L	N	V	L	V	N	Y	S	V	F	D	S	S	Q	T	L	L	V	M	R	P	Y	Q	I	A	A	T	E	R	I	L	W	K	I	K	S	S	F	T	A	K	N	W	S	K	P	E	S	G	G	Y	I	W	H	T	T	G	S	G	K	T	L	T	S	F	K	A	A	R	L	A	T	E	L	D	F	I
Template Known Secondary structure											S					T	T	S																										T	T			S	S	G	G	G	S							T	T	S	S													T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		G	L	T	V	V	V	S	P	L	I	S	L	M	K	D	Q	V	D	Q	L	Q	A	N	G	V	A	A	A	C	L	N	S	T	Q	T	R	E	Q	Q	L	E	V	M	T	G	C	R	T	G	Q	I	R	L	L	Y	I	A	P	E	R	L	M	L	D	N	F	L	E	H	L	A	H	.	.	W	N	P	V	L	L
Query Conservation																																																																										.	.
Alig confidence																																				.	.	.	.	.																																		.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		D	K	V	F	F	V	V	D	R	K	D	L	D	Y	Q	T	M	K	E	Y	Q	R	F	S	P	D	S	V	N	G	S	E	N	T	.	.	.	.	.	A	G	L	K	R	N	L	D	K	D	D	N	K	I	I	V	T	T	I	Q	K	L	N	N	L	M	K	A	E	S	D	L	P	V	Y	N	Q	Q	V	V	F
Template Known Secondary structure										G	G	G											T	T	S	T	T			S	S	S				.	.	.	.	.							T	T		T	T																			S			G	G	G	G	S
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.						.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.																					.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	D	E	A	H	C	I	S	Q	W	G	H	D	F	R	P	E	Y	A	A	L	.	G	Q	L	R	Q	R	F	P	T	L	P	F	M	A	L	T	A	T	A	D	D	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	D	I	V	R	L	L	G	L	N	D	P	L
Query Conservation																								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.
Template Sequence		I	F	D	E	C	H	.	.	.	.	.	.	.	.	.	R	S	Q	F	G	E	A	Q	K	N	L	K	K	K	F	K	R	Y	Y	Q	F	G	F	T	G	T	P	I	F	P	E	N	A	L	G	S	E	T	T	A	S	V	F	G	R	E	L	H	S	Y	V	I	T	D	A	I	R	D	E	K	V	L	K	F	K
Template Known Secondary structure					S			.	.	.	.	.	.	.	.	.																S									S	S				G	G	G		T	T	S									S													T	T	S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.
Template SS confidence
		406	.	.	.	410	.										.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
		203	.	.	.	.	.	.																																210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Query Sequence		I	Q	I	S	S	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	N	I	R	Y	M	L	M	E	K	F	K	P	L	D	Q	L	M	R	Y	V	Q	E	Q	R	G	K	S	G	I	I	Y	C	N	S	.	.	.	.	.	.
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	Y	N	D	V	R	P	Q	F	K	S	L	E	T	E	R	I	Q	E	I	T	Q	Y	I	L	N	N	F	R	Q	K	T	H	R	T	F	P	G	S	K	G	F	N	A	M	L	A	V	S	S	V	D	A	A	K	A	Y	Y	A	T	F	K	P	L	R	I	A	T	I	F	S	F	A	G	E	I	S	D	E
Template Known Secondary structure									T	T	T	T	T	T	T																				T			S	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
							246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	R	A	K	V	E	D	T	A	A	R	L	Q	S	K	G	I	S	A	A	A	Y	H	A	G	L	E	N	N	V	R	A	D	V	Q	E	K	F	Q	R	D	D	L	Q	I	V	V	A	T	V	A	F	G	M	G	I	N	K	P	N	V	R	F	V	V	H	F	D	I	P	R	N	I	E	S	Y
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																																																	.
Template Conservation																																																																							.
Template Sequence		T	F	D	T	A	K	E	F	L	D	A	A	I	R	E	Y	N	S	H	F	K	T	N	F	S	T	D	S	N	G	F	Q	N	Y	Y	R	D	L	A	Q	R	V	K	N	Q	D	I	D	L	L	I	V	V	G	M	F	L	T	G	F	D	A	P	T	L	N	T	L	F	.	V	D	K	N	L	R	Y	H	G	L
Template Known Secondary structure			S																			T					S	S																	T	T	S	S	S					S	S	T	T	S	S	S				T	T						.			S
Template Predicted Secondary structure																																																																							.
Template SS confidence
		598	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.		.	.	.	670	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	E	T	G	R	A	G	R	D	G	L	P	A	E	A	M	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Q	A	F	S	R	T	N	R	I	Y	D	A	T	K	T	F	G	N
Template Known Secondary structure						G	G	G						T	T			S
Template Predicted Secondary structure
Template SS confidence
		683	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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