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Job DescriptionP15043
Confidence100.00%DateThu Jan 5 11:34:25 GMT 2012
Rank33Aligned Residues258
% Identity16%Templatec2v6jA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:rna helicase; PDBTitle: kokobera virus helicase: mutant met47thr
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60... ......70.........80.........90.........100.........110.....
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Query Sequence  GRDCLVVMPTGGGKSLCYQIPALL. . . . LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ
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Template Sequence  RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASETYEALRGEPIRY. . . . . . . . . . . . . . . . . . . . MGN
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   2.......10.........20.........30.........40.........50........ .60.
 
   116...120.........130.........140.........150.........160.........170.........180.........190.....
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Query Sequence  IRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRL
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Template Sequence  EIVDFMCHSTFTMKLLQGV. RVPNYNLYIMDEAHFLDPASVAARGYIETRVSM. . . . GDAGAIFMTAT. . . . . . . . . . . .
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   71........80......... 90.........100.........110.........120.. .......130...
 
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Query Sequence  LGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR
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Template Sequence  . . . PPGTTEAFPPSNSPIIDEETRIPDKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKT. . . . F
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   134.....140.........150.........160.........170.........180.........190.........200..... .
 
   276...280.........290.........300... ......310.........320.........330.........
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Query Sequence  ADVQEKFQRDDLQIVVATVAFGMGINKP. . . . . . . . . . . . . . . . NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF
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Template Sequence  ESEYPKCKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYA
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   207..210.........220.........230.........240.........250.........260.........270.........280......
 
   340.
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Query Sequence  YD
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Template Sequence  YS
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   287.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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