Job Description P15043 Confidence 91.99% Date Thu Jan 5 11:34:25 GMT 2012 Rank 215 Aligned Residues 137 % Identity 13% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		43	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure														.										.	.										.	.														.														.	.
Query SS confidence														.										.	.										.	.														.														.	.
Query Sequence		C	L	V	V	M	P	T	G	G	G	K	S	.	L	C	Y	Q	I	P	A	L	L	.	.	L	N	G	L	T	V	V	V	S	.	.	P	L	I	S	L	M	K	D	Q	V	D	Q	L	.	Q	A	N	G	V	A	A	A	C	L	N	S	T	.	.	Q	T	R	E	Q	Q	L	E	V	M	T	G	C	R	T	G
Query Conservation														.										.	.										.	.														.														.	.
Alig confidence														.										.	.										.	.														.														.	.
Template Conservation
Template Sequence		I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K	K	A
Template Known Secondary structure								S	S	S	S	T	T																							S				T	T	G	G	G	S	S							S	S							S	S	S			S	S	S	T	T							T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	R	L	L	Y	I	A	P	E	R	L	M	L	D	N	F	L	E	H	L	A	H	W	N	P	V	L	L	A	V	D	E	A	H	C	I	S	Q	W	G	H	D	F	R	P	E	Y	A	A	L	G	Q	L	R	Q	R	F	P	T	L	P	F	M	A	L	T
Query Conservation
Alig confidence				.																																									.
Template Conservation				.																																									.
Template Sequence		D	V	.	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	.	Q	Q	A	G	I	Q	A	K	A	F	K	E	A	V	G	E	I	G	S	I	I	V	T
Template Known Secondary structure		S		.								S		S	S											T	T	S	S	S			S								G	G	G	G	.	G	G										T	T	S		S
Template Predicted Secondary structure				.																																									.
Template SS confidence
		183	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions