Job Description P15043 Confidence 100.00% Date Thu Jan 5 11:34:25 GMT 2012 Rank 2 Aligned Residues 498 % Identity 33% Template c2v1xB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent dna helicase q1; PDBTitle: crystal structure of human recq-like dna helicase Resolution 2.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	E	V	L	N	L	E	S	G	A	K	Q	V	L	Q	E	T	F	G	Y	Q	Q	F	R	P	G	Q	E	E	I	I	D	T	V	L	S	G	R	D	C	L	V	V	M	P	T	G	G	G	K	S	L	C	Y	Q	I	P	A	L	L	L	N	G	L	T	V	V	V	S	P	L	I	S	L	M	K	D	Q	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	K	E	D	F	P	W	S	G	K	V	K	D	I	L	Q	N	V	F	K	L	E	K	F	R	P	L	Q	L	E	T	I	N	V	T	M	A	G	K	E	V	F	L	V	M	P	T	G	G	G	K	S	L	C	Y	Q	L	P	A	L	C	S	D	G	F	T	L	V	I	C	P	L	I	S	L	M	E	D	Q	L
Template Known Secondary structure				S		S	T	T											T	S				S			T	T										T	T									T	T	S			T									S	S	S	S							S
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																															.	.																		.	.	.	.	.
Query SS confidence																															.	.																		.	.	.	.	.
Query Sequence		D	Q	L	Q	A	N	G	V	A	A	A	C	L	N	S	T	Q	T	R	E	Q	Q	L	E	V	M	T	G	C	.	.	R	T	G	Q	I	R	L	L	Y	I	A	P	E	R	L	M	L	.	.	.	.	.	D	N	F	L	E	H	L	A	H	W	N	P	V	L	L	A	V	D	E	A	H	C	I	S	Q	W	G
Query Conservation																															.	.																		.	.	.	.	.
Alig confidence																															.	.																		.	.	.	.	.
Template Conservation
Template Sequence		M	V	L	K	Q	L	G	I	S	A	T	M	L	N	A	S	S	S	K	E	H	V	K	W	V	H	A	E	M	V	N	K	N	S	E	L	K	L	I	Y	V	T	P	E	K	I	A	K	S	K	M	F	M	S	R	L	E	K	A	Y	E	A	R	R	F	T	R	I	A	V	D	E	V	H	C	C	S	Q	W	G
Template Known Secondary structure								T								S	S																T	T										T					S														T	T									T	G	G	G	G	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		H	D	F	R	P	E	Y	A	A	L	G	Q	L	R	Q	R	F	P	T	L	P	F	M	A	L	T	A	T	A	D	D	T	T	R	Q	D	I	V	R	L	L	G	L	N	D	P	L	I	Q	I	S	S	F	D	R	P	N	I	R	Y	M	L	M	E	K	F	K	P	L	D	Q	L	M	R	Y	V	Q	E	.	.
Query Conservation																																																																																.	.
Alig confidence																																																																																.	.
Template Conservation
Template Sequence		H	D	F	R	P	D	Y	K	A	L	G	I	L	K	R	Q	F	P	N	A	S	L	I	G	L	T	A	T	A	T	N	H	V	L	T	D	A	Q	K	I	L	C	I	E	K	C	F	T	F	T	A	S	F	N	R	P	N	L	Y	Y	E	V	R	Q	K	P	S	N	T	E	D	F	I	E	D	I	V	K	L	I
Template Known Secondary structure		T	T			G	G	G	G	G	G								T	T	S							S	S													T	T			S											T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
					234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	Q	R	G	K	S	G	I	I	Y	C	N	S	R	A	K	V	E	D	T	A	A	R	L	Q	S	K	G	I	S	A	A	A	Y	H	A	G	L	E	N	N	V	R	A	D	V	Q	E	K	F	Q	R	D	D	L	Q	I	V	V	A	T	V	A	F	G	M	G	I	N	K	P	N	V	R	F	V	V	H
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		N	G	R	Y	K	G	Q	S	G	I	I	Y	C	F	S	Q	K	D	S	E	Q	V	T	V	S	L	Q	N	L	G	I	H	A	G	A	Y	H	A	N	L	E	P	E	D	K	T	T	V	H	R	K	W	S	A	N	E	I	Q	V	V	V	A	T	V	A	F	G	M	G	I	D	K	P	D	V	R	F	V	I	H
Template Known Secondary structure		T	T	T	T	T	T								S	S														T	T								T	T	S														T	T	S	S	S						T	T	S		T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		F	D	I	P	R	N	I	E	S	Y	Y	Q	E	T	G	R	A	G	R	D	G	L	P	A	E	A	M	L	F	Y	D	P	A	D	M	A	W	L	R	R	C	L	E	E	K	P	Q	G	Q	L	Q	D	I	E	R	H	K	L	N	A	M	G	A	F	A	E	A	.	Q	T	C	R	R	L	V	L	L	N	Y	F
Query Conservation																																																																					.
Alig confidence																																												.	.	.	.	.	.																				.
Template Conservation																																												.	.	.	.	.	.
Template Sequence		H	S	M	S	K	S	M	E	N	Y	Y	Q	E	S	G	R	A	G	R	D	D	M	K	A	D	C	I	L	Y	Y	G	F	G	D	I	F	R	I	S	S	M	V	.	.	.	.	.	.	V	M	E	N	V	G	Q	Q	K	L	Y	E	M	V	S	Y	C	Q	N	I	S	K	C	R	R	V	L	M	A	Q	H	F
Template Known Secondary structure		S	S			S	S									T	T	S		T	T	S	S																				T	.	.	.	.	.	.	T	T	S	T	T															S	S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430							.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410						.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.
Query SS confidence																							.	.	.	.	.
Query Sequence		G	E	G	R	Q	E	P	C	G	N	C	D	I	C	L	D	P	P	K	Q	Y	.	.	.	.	.	D	G	S	T	D	A	Q	I	A	L	S	T	I	G	R	V	N	Q	R	F	G	M	G	Y	V	V	E	V	I	R	G	A	N	N	Q	R	I	R	D	Y	G	H	D	K	L	K	V	Y	G	M	G	R	D	K
Query Conservation																							.	.	.	.	.
Alig confidence							.																.	.	.	.	.																																									.	.	.	.	.	.	.
Template Conservation							.																																																													.	.	.	.	.	.	.
Template Sequence		D	E	V	W	A	.	C	N	K	M	C	D	N	C	C	K	D	S	A	F	E	R	K	N	I	T	E	Y	C	R	D	L	I	K	I	L	K	Q	A	E	E	L	N	E	K	L	T	P	L	K	L	I	D	S	W	M	G	K	G	A	A	K	L	R	V	A	.	.	.	.	.	.	.	G	V	V	A	P	T	L
Template Known Secondary structure		T					.			S		B	T	T	T	S																											T	T														T		S		G	G	G			T	.	.	.	.	.	.	.	T					S	S
Template Predicted Secondary structure							.																																																													.	.	.	.	.	.	.
Template SS confidence
		463	.	.	.	.		.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.								.	.	530	.	.	.	.
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.						.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.
Query SS confidence																							.	.	.	.	.
Query Sequence		S	H	E	H	W	V	S	V	I	R	Q	L	I	H	L	G	L	V	T	Q	N	.	.	.	.	.	I	A	Q	H	S	A	L	Q	L	T	E	A	A	R	P	V	L	R	G	E	S	S	L	Q	L	A	V	P	R
Query Conservation																							.	.	.	.	.
Alig confidence																							.	.	.	.	.
Template Conservation
Template Sequence		P	R	E	D	L	E	K	I	I	A	H	F	L	I	Q	Q	Y	L	K	E	D	Y	S	F	T	A	Y	A	T	I	S	Y	L	K	I	G	P	K	A	N	L	L	N	N	E	A	H	A	I	T	M	Q	V	T	K
Template Known Secondary structure																T	T	S									T	T										G	G	G	G	G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.