Phyre 2 alignment of P15043 with c2ocaA

Job Description P15043
Confidence 100.00% Date Thu Jan 5 11:34:25 GMT 2012

Rank 35 Aligned Residues 298

% Identity 13% Template c2ocaA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase uvsw; PDBTitle: the crystal structure of t4 uvsw

Resolution 2.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.					90	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.																											.	.	.	.
Query SS confidence																																								.	.	.	.																											.	.	.	.
Query Sequence	Q	F	R	P	G	Q	E	E	I	I	D	T	V	L	S	G	R	D	C	L	V	V	M	P	T	G	G	G	K	S	L	C	Y	Q	I	P	A	L	L	.	.	.	.	L	N	G	L	T	V	V	V	S	P	L	I	S	L	M	K	D	Q	V	D	Q	L	Q	A	N	G	.	.	.	.	V	A	A	A	C	L	N
Query Conservation																																								.	.	.	.																											.	.	.	.
Alig confidence																																								.	.	.	.																											.	.	.	.
Template Conservation
Template Sequence	E	P	H	W	Y	Q	K	D	A	V	F	E	G	L	V	N	R	R	R	I	L	N	L	P	T	S	A	G	R	S	L	I	Q	A	L	L	A	R	Y	Y	L	E	N	Y	E	G	K	I	L	I	I	V	P	T	T	A	L	T	T	Q	M	A	D	D	F	V	D	Y	R	L	F	S	H	A	M	I	K	K	I	G
Template Known Secondary structure																	S								S	T	T	T																	S	S							S	S														T	T	S	S		G	G	G					G
Template Predicted Secondary structure
Template SS confidence
	113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

	97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	T	Q	T	R	E	Q	Q	L	E	V	M	T	G	C	R	T	G	Q	I	R	L	L	Y	I	A	P	E	R	L	M	L	D	N	F	L	E	H	L	A	H	W	N	P	V	L	L	A	V	D	E	A	H	C	I	S	Q	W	G	H	D	F	R	P	E	Y	A	A	L	G	Q	L	R	Q	R	F	P	T	L	P
Query Conservation
Alig confidence									.	.	.	.	.	.	.																						.	.	.																						.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.																						.	.	.																						.	.	.	.	.	.	.	.
Template Sequence	G	G	A	S	K	D	D	K	.	.	.	.	.	.	.	Y	K	N	D	A	P	V	V	V	G	T	W	Q	T	V	V	K	Q	P	K	E	.	.	.	W	F	S	Q	F	G	M	M	M	N	D	E	C	H	L	A	T	G	K	S	I	.	.	.	.	.	.	.	.	S	S	I	I	S	G	L	N	N	C	M	F
Template Known Secondary structure	G	G			T	T	G	G	.	.	.	.	.	.	.	G		T	T		S										T	T	S		G	G	.	.	.	G	G	G	G								T	G	G	G							.	.	.	.	.	.	.	.				G	G	G		T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.																						.	.	.																						.	.	.	.	.	.	.	.
Template SS confidence
	193	.	.	.	.	.	.	200								.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.									.	.	.	.	.	.	.	250	.	.	.	.

	177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.																									220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	F	M	A	L	T	A	T	A	D	D	T	T	R	Q	D	I	V	R	L	L	G	L	N	D	P	L	I	Q	I	S	S	F	D	R	P	N	I	R	Y	M	L	M	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	K	P	L	D	Q	L	M	R	Y	V	Q
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	F	G	L	S	G	S	L	R	D	G	K	A	N	I	M	Q	Y	V	G	M	F	G	E	I	F	K	P	V	T	T	S	E	L	K	I	N	S	I	F	L	R	Y	P	D	E	F	T	T	K	L	K	G	K	T	Y	Q	E	E	I	K	I	I	T	G	L	S	K	R	N	K	W	I	A	K	L	A	I	K	L
Template Known Secondary structure						S		G	G	G		S	S											S																												T	T												T
Template Predicted Secondary structure
Template SS confidence
	255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence	E	Q	R	G	K	S	G	I	I	Y	C	N	S	R	A	K	V	E	D	T	A	A	R	L	Q	S	K	G	I	S	A	A	A	Y	H	A	G	L	E	N	N	V	R	A	D	V	Q	E	K	F	Q	R	D	D	L	Q	.	I	V	V	A	T	V	A	F	G	M	G	I	N	K	P	N	V	R	F	V	V	H	F
Query Conservation																																																									.
Alig confidence																																																									.
Template Conservation
Template Sequence	A	Q	K	D	E	N	A	F	V	M	F	K	H	V	S	H	G	K	A	I	F	D	L	I	K	N	E	Y	D	K	V	Y	Y	V	S	G	E	V	D	T	E	T	R	N	I	M	K	T	L	A	E	N	G	K	G	I	I	I	V	A	S	Y	G	V	F	S	T	G	I	S	V	K	N	L	H	H	V	V	L	A
Template Known Secondary structure		T	T	T								S	S													T	T		S	S					S	S	S	T	T																S													S					S							S
Template Predicted Secondary structure
Template SS confidence
	344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.

	312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence	D	I	P	R	N	I	E	S	Y	Y	Q	E	T	G	R	A	G	R	D	G	L	P	A	E	A	M	L	F	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence	H	G	V	K	S	K	I	I	V	L	Q	T	I	G	R	V	L	R	K	H	G	S	K	T	I	A	T	V	W
Template Known Secondary structure	S				S													T	T	T
Template Predicted Secondary structure
Template SS confidence
	424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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