Job Description P15043 Confidence 100.00% Date Thu Jan 5 11:34:25 GMT 2012 Rank 25 Aligned Residues 346 % Identity 19% Template c2i4iA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase ddx3x; PDBTitle: crystal structure of human dead-box rna helicase ddx3x Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	Q	A	E	V	L	N	L	E	S	G	A	K	Q	V	L	Q	E	T	F	G	Y	Q	Q	F	R	P	G	Q	E	E	I	I	D	T	V	L	S	G	R	D	C	L	V	V	M	P	T	G	G	G	K	S	L	C	Y	Q	I	P	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		I	E	S	F	S	D	V	E	M	G	E	I	I	M	G	N	I	E	L	.	T	R	Y	T	R	P	T	P	V	Q	K	H	A	I	P	I	I	K	E	K	R	D	L	M	A	C	A	Q	T	G	S	G	K	T	A	A	F	L	L	P	I	L	S	Q	I	Y	S	D	G	P	G	E	A	L	R	A	M	K	E	N
Template Known Secondary structure			S	S	G	G	G	S													.		T			S														T	T									T	T	S
Template Predicted Secondary structure																					.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
								63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure		.	.	.	.	.	.																										.	.	.	.
Query SS confidence		.	.	.	.	.	.																										.	.	.	.
Query Sequence		.	.	.	.	.	.	L	L	N	G	L	T	V	V	V	S	P	L	I	S	L	M	K	D	Q	V	D	Q	L	Q	A	.	.	.	.	N	G	V	A	A	A	C	L	N	S	T	Q	T	R	E	Q	Q	L	E	V	M	T	G	C	R	T	G	Q	I	R	L	L	Y	I	A	P	E	R	L	M	L	D	N	F	L
Query Conservation		.	.	.	.	.	.																										.	.	.	.
Alig confidence		.	.	.	.	.	.																										.	.	.	.																									.	.	.	.
Template Conservation																																																													.	.	.	.
Template Sequence		G	R	Y	G	R	R	K	Q	Y	P	I	S	L	V	L	A	P	T	R	E	L	A	V	Q	I	Y	E	E	A	R	K	F	S	Y	R	S	R	V	R	P	C	V	V	Y	G	G	A	D	I	G	Q	Q	I	R	D	L	E	R	G	.	.	.	.	C	H	L	L	V	A	T	P	G	R	L	V	D	M	M	E	R
Template Known Secondary structure		B	T	T	B	S		S	B			S						S	S																T	T	S	S								S	S	S										T	T		.	.	.	.		S															T
Template Predicted Secondary structure																																																													.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.					.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	L	A	H	W	N	P	V	L	L	A	V	D	E	A	H	C	I	S	Q	W	G	H	D	F	R	P	E	Y	A	A	L	G	Q	L	R	Q	R	F	P	T	L	P	F	M	A	L	T	A	T	A	D	D	T	T	R	Q	D	I	V	R	L	L	G	L	N	D	P	L	I	Q	I	S	S	F	D	R	P	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	I	G	L	D	F	C	K	Y	L	V	L	D	E	A	D	R	M	L	D	M	G	F	E	P	Q	I	R	R	I	V	E	Q	D	T	M	P	P	K	G	V	R	H	T	M	M	F	S	A	T	F	P	K	E	I	Q	M	L	A	R	D	F	L	D	E	Y	I	F	L	A	V	G	T	S	E	N	I	T	Q
Template Known Secondary structure		T	S	B			T	T							S	S							T	T										T	S	S	S				B	T	T	B							S															S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	Y	M	L	M	E	K	F	K	P	L	D	Q	L	M	R	Y	V	Q	E	Q	R	G	K	S	G	I	I	Y	C	N	S	R	A	K	V	E	D	T	A	A	R	L	Q	S	K	G	I	S	A	A	A	Y	H	A	G	L	E	N	N	V	R	A	D	V	Q	E	K	F	Q	R	D	D	L	Q	I	V	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	V	W	V	E	E	S	D	K	R	S	F	L	L	D	L	L	N	A	T	G	K	D	S	L	T	L	V	F	V	E	T	K	K	G	A	D	S	L	E	D	F	L	Y	H	E	G	Y	A	C	T	S	I	H	G	D	R	S	Q	R	D	R	E	E	A	L	H	Q	F	R	S	G	K	S	P	I	L	V	A
Template Known Secondary structure								G	G	G											T			T	T								S	S														T	T								T	T	S															T	S	S
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	A	F	G	M	G	I	N	K	P	N	V	R	F	V	V	H	F	D	I	P	R	N	I	E	S	Y	Y	Q	E	T	G	R	A	G	R	D	G	L	P	A	E	A	M	L	F	Y	D	P	A	D	M	A	W	L	R	R	C	L	E
Query Conservation
Alig confidence																																							.	.
Template Conservation																																							.	.
Template Sequence		T	A	V	A	A	R	G	L	D	I	S	N	V	K	H	V	I	N	F	D	L	P	S	D	I	E	E	Y	V	H	R	I	G	R	T	G	R	.	.	N	L	G	L	A	T	S	F	F	N	E	R	N	I	N	I	T	K	D	L	L	D
Template Known Secondary structure							T	T	S											S	S			S	S									T	T	B			.	.											G	G	G	G	G	G
Template Predicted Secondary structure																																							.	.
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.			.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions