Job Description P15043 Confidence 100.00% Date Thu Jan 5 11:34:25 GMT 2012 Rank 43 Aligned Residues 287 % Identity 18% Template c2fwrA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad25; PDBTitle: structure of archaeoglobus fulgidis xpb Resolution 2.60 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	R	P	G	Q	E	E	I	I	D	T	V	L	S	G	R	D	C	L	V	V	M	P	T	G	G	G	K	S	L	C	Y	Q	I	P	A	L	L	L	N	G	L	T	V	V	V	S	P	L	I	S	L	M	K	D	Q	V	D	Q	L	Q	A	N	G	V	A	A	A	C	L	N	S	T	Q	T	R	E	Q	Q
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		S	L	R	D	Y	Q	E	K	A	L	E	R	W	L	V	D	K	R	G	C	I	V	L	P	T	G	S	G	K	T	H	V	A	M	A	A	I	N	E	L	S	T	P	T	L	I	V	V	P	T	L	A	L	A	E	Q	W	K	E	R	L	G	I	F	G	E	E	Y	V	G	E	F	S	G	R	.	.	.	.	.
Template Known Secondary structure			B												T	T	T	T								T	T	S															S							S	S											G	G	G	G		G	G	G				B	S	S	S	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	V	M	T	G	C	R	T	G	Q	I	R	L	L	Y	I	A	P	E	R	L	M	L	D	N	F	L	E	H	L	A	H	W	N	P	V	L	L	A	V	D	E	A	H	C	I	S	Q	W	G	H	D	F	R	P	E	Y	A	A	L	G	Q	L	R	Q	R	F	P	T	L	P	F	M	A	L	T	A	T	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.																					.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																					.	.	.																						.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	I	K	E	L	K	P	L	T	V	S	T	Y	D	S	A	Y	V	N	A	E	.	.	.	K	L	G	N	R	F	M	L	L	I	F	D	E	V	H	H	L	P	A	E	S	.	.	.	.	.	.	.	.	.	Y	V	Q	I	A	Q	M	S	I	A	P	F	R	L	G	L	T	A	T	F
Template Known Secondary structure		.	.	.	.	.	.	.		B				S												T			.	.	.			T	T	T		S						T	G	G	G	T	T	S	T	T	.	.	.	.	.	.	.	.	.	T						T				S							S
Template Predicted Secondary structure		.	.	.	.	.	.	.																					.	.	.																						.	.	.	.	.	.	.	.	.
Template SS confidence
									168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.										.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	T	T	R	Q	D	I	V	R	L	L	G	L	N	D	P	L	I	Q	I	S	S	F	D	R	P	N	I	R	Y	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	R	E	D	G	R	H	E	I	L	K	E	V	V	G	G	K	V	F	E	L	F	P	D	S	L	A	G	K	H	L	A	K	Y	T	I	K	R	I	F	V	P	L	A	E	D	E	R	V	E	Y	E	K	R	E	K	V	Y	K	Q	F	L	R	A	R	G	I	T	L	R	R	A	E	D	F	N	K	I	V	M
Template Known Secondary structure				T	T	S	G	G	G	S					T													T	S					S																		T	T	T	T	T					S		S	S	S				T	T	T			S	S	S	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
																							217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	M	E	K	F	K	P	L	D	Q	L	M	R	Y	V	Q	E	Q	R	G	K	S	G	I	I	Y	C	N	S	R	A	K	V	E	D	T	A	A	R	L	Q	S	K	G	I	S	A	A	A	Y	H	A	G	L	E	N	N	V	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Template Conservation																																																														.	.	.	.	.
Template Sequence		A	S	G	Y	D	E	R	A	Y	E	A	L	R	A	W	E	E	A	R	R	I	A	F	N	S	K	N	K	I	R	K	L	R	E	I	L	E	R	H	R	K	D	K	I	I	I	F	T	R	H	N	E	L	V	Y	R	I	S	K	V	.	.	.	.	.	F	L	I	P	A	I	T	H	R	T	S	R	E	E	R
Template Known Secondary structure		T	T			S	S	S	S	S	T	T	T												S		S													T	S	S	S		B			B		S												.	.	.	.	.	T	T			B			S	S	S		S
Template Predicted Secondary structure																																																														.	.	.	.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.						.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	V	Q	E	K	F	Q	R	D	D	L	Q	I	V	V	A	T	V	A	F	G	M	G	I	N	K	P	N	V	R	F	V	V	H	F	D	I	P	R	N	I	E	S	Y	Y	Q	E	T	G	R	A	G	R	D	G	L	P	A	E	A	M	L	F	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	I	L	E	G	F	R	T	G	R	F	R	A	I	V	S	S	Q	V	L	D	E	G	I	D	V	P	D	A	N	V	G	V	I	M	S	G	S	G	S	A	R	E	Y	I	Q	R	L	G	R	I	L	R	P	S	K	G	K	K	E	A	V	L	Y
Template Known Secondary structure			T								S	S		S	B		B		S	S				S	S	S		S			B	S								S	S												S	B				T	T	T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions