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Job DescriptionP15043
Confidence100.00%DateThu Jan 5 11:34:25 GMT 2012
Rank47Aligned Residues325
% Identity20%Templatec2d7dA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:uvrabc system protein b; PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40 .........50.........60.........70.........80.........
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Query Sequence  FGYQQFRPGQEEIIDTVLSG. . . . . RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANG. . . . . .
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Template Sequence  SKYQ. PQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVE
Template Known Secondary structure 
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TTTT
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TTS




SS
TTS
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   910.. .......20.........30.........40.........50.........60.........70.........80.......
 
   90.........100.........110.........120.........130.........140........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEA
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Template Sequence  YFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYR. EMVVSLRTEME
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TTTT



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GGGGS
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   88.90.........100.........110.........120.........130.........140.........150..... ....160......
 
   149150.
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Query Sequence  HCI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                                                  
Template Sequence  IERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIFPA
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TT

SSS

TTTT
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SSSSSBTTT


S

S
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   167..170.........180.........190.........200.........210.........220.........230.........240......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                                  
Template Sequence  SHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGSTPYTLL
Template Known Secondary structure  SSS


TT
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TTGGGGTT

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B
GG
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   247..250.........260.........270.........280.........290.........300.........310.........320......
 
   152.......160.........170.. .......180.........190....
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Query Sequence  . . . . . . . . . . . . . . . . . . SQWGHDFRPEYAALGQLRQRF. . . . . . . . . . . . . . . . . . . PTLPFMALTATADDTTRQDIVR
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Template Sequence  DYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEH. . .
Template Known Secondary structure  GGS
SS
TTTSS
GGGGGS



T
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   327..330.........340.........350.........360.........370.........380.........390.........400...
 
   195....200.........210.........220.........230.... .....240.........250.........260.........270..
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Query Sequence  LLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQ. . RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLEN
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Template Conservation  ..                          
   
   
                                           
Template Sequence  . . TDEMVEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKT
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TT





STTTTT

SSTT


TT

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   404.....410.........420.........430.........440.........450.........460.........470.........480.
 
   273......280.........290.........300.........310..... ....320.........330.........340.......
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Query Sequence  NVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR. . . . . NIESYYQETGRAGRDGLPAEAMLFYDPADMAW
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Template Sequence  LERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAE. GRVIMYADKITKSM
Template Known Secondary structure  TS
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STT


TTTTTT

TTTTSTTTTSTT.

SS

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   482.......490.........500.........510.........520.........530.........540...... ...550.........560
 
   348.350...
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Query Sequence  LRRCLE
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Template Conservation        
Template Sequence  EIAINE
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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