Job Description P15043 Confidence 91.54% Date Thu Jan 5 11:34:25 GMT 2012 Rank 216 Aligned Residues 79 % Identity 15% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		43	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure														.										.	.										.	.														.																				.
Query SS confidence														.										.	.										.	.														.																				.
Query Sequence		C	L	V	V	M	P	T	G	G	G	K	S	.	L	C	Y	Q	I	P	A	L	L	.	.	L	N	G	L	T	V	V	V	S	.	.	P	L	I	S	L	M	K	D	Q	V	D	Q	L	.	Q	A	N	G	V	A	A	A	C	L	N	S	T	Q	T	R	E	Q	Q	.	L	E	V	M	T	G	C	R	T	G	Q
Query Conservation														.										.	.										.	.														.																				.
Alig confidence														.										.	.										.	.														.																				.
Template Conservation
Template Sequence		I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K
Template Known Secondary structure							S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T	T							S	S				T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		116	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	L	L	Y	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	D	I	I	I	V
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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