Job Description P15043 Confidence 100.00% Date Thu Jan 5 11:34:25 GMT 2012 Rank 9 Aligned Residues 340 % Identity 19% Template c1hv8B_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:putative atp-dependent rna helicase mj0669; PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii Resolution 3.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																										.																							.	.	.	.	.
Query SS confidence																																										.																							.	.	.	.	.
Query Sequence		A	Q	A	E	V	L	N	L	E	S	G	A	K	Q	V	L	Q	E	T	F	G	Y	Q	Q	F	R	P	G	Q	E	E	I	I	D	T	V	L	S	G	R	.	D	C	L	V	V	M	P	T	G	G	G	K	S	L	C	Y	Q	I	P	A	L	L	.	.	.	.	.	L	N	G	L	T	V	V	V	S	P	L	I
Query Conservation																																										.																							.	.	.	.	.
Alig confidence																				.																						.																							.	.	.	.	.
Template Conservation																				.
Template Sequence		X	N	F	N	E	L	N	L	S	D	N	I	L	N	A	I	R	N	.	K	G	F	E	K	P	T	D	I	Q	X	K	V	I	P	L	F	L	N	D	E	Y	N	I	V	A	Q	A	R	T	G	S	G	K	T	A	S	F	A	I	P	L	I	E	L	V	N	E	N	N	G	I	E	A	I	I	L	T	P	T	R
Template Known Secondary structure		S	S	G	G	G	S	S												.		T			S															T		S								S	S	S	S													S		S	S	S	S								S
Template Predicted Secondary structure																				.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.					.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		S	L	M	K	D	Q	V	D	Q	L	Q	A	N	.	.	.	.	G	V	A	A	A	C	L	N	S	T	Q	T	R	E	Q	Q	L	E	V	M	T	G	C	R	T	G	Q	I	R	L	L	Y	I	A	P	E	R	L	M	L	D	N	F	L	E	H	L	A	H	W	N	P	V	L	L	A	V	D	E	A	H	C	I
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.																						.	.	.	.	.
Template Conservation																																								.	.	.	.	.
Template Sequence		E	L	A	I	Q	V	A	D	E	I	E	S	L	K	G	N	K	N	L	K	I	A	K	I	Y	G	G	K	A	I	Y	P	Q	I	K	A	L	K	.	.	.	.	.	N	A	N	I	V	V	G	T	P	G	R	I	L	D	H	I	N	R	G	T	L	N	L	K	N	V	K	Y	F	I	L	D	E	A	D	E	X
Template Known Secondary structure																	S	S									T	T	S											.	.	.	.	.	T		S															T	T	S	S		G	G	G								T
Template Predicted Secondary structure																																								.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.						.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	W	G	H	D	F	R	P	E	Y	A	A	L	G	Q	L	R	Q	R	F	P	T	L	P	F	M	A	L	T	A	T	A	D	D	T	T	R	Q	D	I	V	R	L	L	G	L	N	D	P	L	I	Q	I	S	S	F	D	R	P	N	I	R	Y	M	L	M	E	K	F	K	P	L	D	Q	L	M	R	Y	V
Query Conservation
Alig confidence											.	.	.	.																																		.	.
Template Conservation											.	.	.	.																																		.	.
Template Sequence		L	N	X	G	F	I	K	D	V	.	.	.	.	E	K	I	L	N	A	C	N	K	D	K	R	I	L	L	F	S	A	T	X	P	R	E	I	L	N	L	A	K	K	Y	X	G	.	.	D	Y	S	F	I	K	A	K	I	N	A	N	I	E	Q	S	Y	V	E	V	N	E	N	E	R	F	E	A	L	C	R	L
Template Known Secondary structure			T	T	T	T					.	.	.	.						T	S		S	S								S	S															.	.	S								S	T	T	T	S									G	G	G
Template Predicted Secondary structure											.	.	.	.																																		.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	Q	R	G	K	S	G	I	I	Y	C	N	S	R	A	K	V	E	D	T	A	A	R	L	Q	S	K	G	I	S	A	A	A	Y	H	A	G	L	E	N	N	V	R	A	D	V	Q	E	K	F	Q	R	D	D	L	Q	I	V	V	A	T	V	A	F	G	M	G	I	N	K	P	N	V	R	F	V	V	H	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	N	K	E	F	Y	G	L	V	F	C	K	T	K	R	D	T	K	E	L	A	S	X	L	R	D	I	G	F	K	A	G	A	I	H	G	D	L	S	Q	S	Q	R	E	K	V	I	R	L	F	K	Q	K	K	I	R	I	L	I	A	T	D	V	X	S	R	G	I	D	V	N	D	L	N	C	V	I	N	Y
Template Known Secondary structure				S	T	T								S	S												T	T	T	T								S	S	S															T	S	S	S						T	T								S			S					S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	P	R	N	I	E	S	Y	Y	Q	E	T	G	R	A	G	R	D	G	L	P	A	E	A	M	L	F	Y	D	P	A	D	M	A	W	L	R	R	C	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	L	P	Q	N	P	E	S	Y	X	H	R	I	G	R	T	G	R	A	G	K	K	G	K	A	I	S	I	I	N	R	R	E	Y	K	K	L	R	Y	I	E	R
Template Known Secondary structure		S			S	S								S	T	T	T			T	T	S										S	T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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