Job Description P15043 Confidence 100.00% Date Thu Jan 5 11:34:25 GMT 2012 Rank 39 Aligned Residues 268 % Identity 19% Template c1a1vA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna Resolution 2.20 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		S	G	R	D	C	L	V	V	M	P	T	G	G	G	K	S	L	C	Y	Q	I	P	A	L	L	L	N	G	L	T	V	V	V	S	P	L	I	S	L	M	K	D	Q	V	D	Q	L	Q	A	.	N	G	V	A	A	A	C	L	N	S	T	Q	T	R	E	Q	Q	L	E	V	M	T	G	C	R	T	G	Q	I	R
Query Conservation																																																			.
Alig confidence																																																			.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	A	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	V	D	P	N	I	R	T	G	V	.	.	.	.	.	.	.	.	.	.	.	R	T	I	T	T	G	S	P
Template Known Secondary structure		S										T	T	S		T	T	T								T	T	T								S																	S								S	S	.	.	.	.	.	.	.	.	.	.	.								S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.												.	.	.	260	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	Y	I	A	P	E	R	L	M	L	D	N	F	L	E	H	L	A	H	W	N	P	V	L	L	A	V	D	E	A	H	C	I	S	Q	W	G	H	D	F	R	P	E	Y	A	A	L	G	Q	L	R	Q	R	F	P	T	L	P	F	M	A	L	T	A	T	A	D	D	T	T	R	Q	D	I	V	R	L	L	G
Query Conservation
Alig confidence													.	.	.	.																																		.	.	.																				.	.	.	.	.	.
Template Conservation													.	.	.	.																																		.	.	.																				.	.	.	.	.	.
Template Sequence		I	T	Y	S	T	Y	G	K	F	L	A	.	.	.	.	D	G	G	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	A	T	S	I	L	G	I	G	T	V	L	D	Q	.	.	.	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	S	.	.	.	.	.	.	V	T	V	P
Template Known Secondary structure													.	.	.	.	T	T							S						T	T	T			S														.	.	.	T	T	T	T	T		S							S	S		T	T		.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.																																		.	.	.																				.	.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.							.	.	330	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	D	P	L	I	Q	I	S	S	F	D	R	P	N	I	R	Y	M	L	M	E	K	F	K	P	L	D	Q	L	M	R	Y	V	Q	E	Q	R	G	K	S	G	I	I	Y	C	N	S	R	A	K	V	E	D	T	A	A	R	L	Q	S	K	G	I	S	A	A	A	Y	H	A	G	L	E	N	N	V	R	A	D
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.
Template Sequence		H	P	N	I	E	E	V	A	L	S	T	T	G	E	I	P	F	Y	G	K	A	I	P	L	E	V	I	K	.	.	.	.	.	.	.	.	.	.	G	G	R	H	L	I	F	C	H	S	K	K	K	C	D	E	L	A	A	K	L	V	A	L	G	I	N	A	V	A	Y	Y	R	G	L	D	V	S	V	I	P	T
Template Known Secondary structure			T	T								S		S	S				T	T					T					.	.	.	.	.	.	.	.	.	.	S	S							S	S														T	T								T	T	S		G	G	G	S		S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360											.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		278	.	280	.	.								.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure							.	.	.	.	.	.	.																			.	.
Query SS confidence							.	.	.	.	.	.	.																			.	.
Query Sequence		V	Q	E	K	F	.	.	.	.	.	.	.	Q	R	D	D	L	Q	I	V	V	A	T	V	A	F	G	M	G	I	.	.	N	K	P	N	V	R	F	V	V	H	F	D	I	P	R	N	I	E	S	Y	Y	Q	E	T	G	R	A	G	R	D	G	L	P	A	E	A	M	L	F	Y	D
Query Conservation							.	.	.	.	.	.	.																			.	.
Alig confidence							.	.	.	.	.	.	.																			.	.																														.
Template Conservation																																																															.
Template Sequence		S	G	D	V	V	V	V	A	T	D	A	L	F	T	G	D	F	D	S	V	I	D	C	N	T	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	L	P	Q	D	A	V	S	R	T	Q	R	R	G	R	T	G	R	.	G	K	P	G	I	Y	R	F	V	A	P
Template Known Secondary structure		S	S	S							T	T						B	S																	S	S	S											B									T	T	B		S	.	S	S							S		S
Template Predicted Secondary structure																																																															.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.		.	.	.	.	.	.	470	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions