|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | A | T | A | G | H | V | D | H | G | K | T | T | L | L | Q | A | I | T | G | V | N | A | D | R | L | P | E | E | K | K | R | G | M | T | I | D | L | G | Y | A | Y | W | P | Q | P | D | G | R | V | P | G | F | I | D | V | P | G | H | E | K | F | L | S | N | M | L | A | G | V | G | G | I | D | H | A | L | L | V | V |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|   |   |   |
|   |   |   |
|
|   |   |
|
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|
|
|
|   |
|
|   |   |
|
|   |
|   |   |   |   |
|   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|   |   |   |   |
|
|
|
|
|
|   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
|
|   |   | . | . |   |   |   |   |   |   |   | . |   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
Template Sequence |   |
L | L | L | L | G | A | G | E | S | G | K | S | T | I | V | K | Q | M | . |
. |
. |
. |
. |
. |
. |
. |
K | I | I | H | Q | D | G | T | G | I | I | E | . |
. |
T | Q | F | S | F | K | D | . |
L | N | F | R | M | F | D | V | G | G | Q | R | S | E | R | K | K | W | I | H | C | F | E | G | V | T | C | I | I | F | I | A |
Template Known Secondary structure |   |
 |  |  |  |
| S | T | T | S | S |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  | S |
|
|
|
|
|  |  | . | . |  |  |  |  |  | T | T | . |  |  |  |  |  |  |  |
|
|
| S |  |  |  |  | T | T | G | G | G | G |
| T | T |
| S |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  | . | . |  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
32 | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
50 | . | . | . | . | . | . | . | . | . | 60 | . | |
|
. | . | . | . | . | . | . | |
. | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 |
  |
  |   |
83 | . | . | |
|
|
|
|
|
|
|
. | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 120 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
| . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | C | D | . |
. |
. |
. |
. |
. |
. |
. |
D | G | V | M | A | Q | T | R | E | H | L | A | I | L | Q | L | T | . |
. |
. |
. |
. |
. |
. |
G | N | P | M | L | T | V | A | L | T | K | A | D | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | D | E | A | R | V | D | E | V | E |
Query Conservation |   |
|
|   | . | . | . | . | . | . | . | . |   |
|   |   |   |
|
|   |
|
|
|   |
|   |   |   |
| . | . | . | . | . | . | . |
|
|   |   |   |
|
|
|
|
|
|   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |
|   |   |
|   |   |   |
Alig confidence |   |
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
| . |
|
|
|
|   |
|
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | L | S | A | Y | D | M | V | L | V | E | D | D | E | V | N | R | M | H | E | S | L | H | L | F | N | S | I | C | N | H | R | Y | F | A | T | T | S | . |
I | V | L | F | L | N | K | K | D | V | F | S | E | K | I | K | K | A | H | L | S | I | C | F | P | D | Y | N | G | P | N | T | Y | E | D | A | G | N | Y | I | K |
Template Known Secondary structure |   |
 | G | G | G | G | G |
| B |
| S | S |
| T | T | S | B |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| G | G | G | T | T | S |  | . |  |  |  |  |  |  |
|  |  |  |  |  |  |  | T | T | T | S |
| G | G | G | T |
| T | T |
|
| S |
|
|
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
222 | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | |
260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 |
  |
  |   |
127 | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | Q | V | K | E | V | L | R | E | Y | G | F | A | E | A | K | L | F | I | T | A | A | T | E | G | R | G | M | D | A | L | R | E | H | L | L | Q | L |
Query Conservation |   |
  |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |
|
|   |
|
|   |   |
|   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |
Template Sequence |   |
V | Q | F | L | E | L | N | M | R | R | D | V | K | E | I | Y | S | H | M | T | C | A | T | D | T | Q | N | V | K | F | V | F | D | A | V | T | D | I |
Template Known Secondary structure |   |
 |  |  |  | T | T |
| T | T | T | T | T | S |
|
|  |  |  |  |
|
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
301 | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . |
  |