Job Description P14081 Confidence 100.00% Date Thu Jan 5 11:33:54 GMT 2012 Rank 15 Aligned Residues 333 % Identity 22% Template c3p27A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: crystal structure of a translational gtpase (gdp form) Resolution 2.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.									.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.
Query Sequence		M	I	I	A	T	A	G	H	V	D	H	G	K	T	T	L	L	Q	A	I	T	G	V	N	.	.	.	.	.	.	.	.	A	D	R	L	P	E	E	K	K	R	G	M	T	I	D	L	G	Y	A	Y	W	P	Q	P	D	G	R	V	P	G	F	I	D	V	P	G	H	E	K	F	L	S	N	M	L	A	G	V
Query Conservation																										.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.																										.												.	.	.	.
Template Conservation																																																											.												.	.	.	.
Template Sequence		L	S	F	V	V	L	G	H	V	D	A	G	K	S	T	L	X	G	R	L	L	Y	D	L	N	I	V	N	Q	S	Q	L	R	K	L	Q	R	W	I	X	D	Q	T	V	T	V	S	I	C	T	S	H	F	S	T	H	R	.	A	N	F	T	I	V	D	A	P	G	V	.	.	.	.	P	N	A	I	X	G	I
Template Known Secondary structure										T	T	S	S												T	T	S	S		T	T																										S	S	.												.	.	.	.
Template Predicted Secondary structure																																																											.												.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.
Predicted Secondary structure																	.																															.	.																						.	.
Query SS confidence																	.																															.	.																						.	.
Query Sequence		G	G	I	D	H	A	L	L	V	V	A	C	D	D	G	.	V	M	A	Q	T	R	E	H	L	A	I	L	Q	L	T	G	N	P	M	L	T	V	A	L	T	K	A	D	R	V	.	.	D	E	A	R	V	D	E	V	E	R	Q	V	K	E	V	L	R	E	Y	G	F	.	.	A	E	A	K	L	F	I	T	A
Query Conservation																	.																															.	.																						.	.
Alig confidence																	.																															.	.																						.	.
Template Conservation
Template Sequence		S	Q	A	D	X	A	I	L	C	V	D	C	S	T	F	D	L	D	G	Q	T	K	E	H	X	L	L	A	S	S	L	G	I	H	N	L	I	I	A	X	N	K	X	D	N	V	D	W	S	Q	Q	R	F	E	E	I	K	S	K	L	L	P	Y	L	V	D	I	G	F	F	E	D	N	I	N	W	V	P	I	S
Template Known Secondary structure					S																											T	T											G	G	G	G	T	T																				T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		148	.	150	.	.	.	.																				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	E	G	R	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	L	R	E	H	L	L	Q	L	P	E	R	E	H	A	S	Q	H	S	F	R	L	A	I	D	R	A	F	T	V	K	G	A	G	L	V	V	T	G	T	A	L	S	G	E	V	K	V	G	D	S	L	W
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	S	G	E	G	V	Y	K	I	E	Y	T	D	E	V	R	Q	W	Y	N	G	P	N	L	X	S	T	L	E	N	A	A	F	K	I	S	K	E	N	E	G	I	N	K	D	D	P	F	L	F	S	V	L	E	I	I	P	S	K	L	A	L	V	S	G	K	L	E	S	G	S	I	Q	P	G	E	S	L	T
Template Known Secondary structure		T	T	T		B	T	T	S	S	B								T	T			S																		T	T	S			S	S	S																								S				T	T
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.						.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																	.	.	.																																										.	.	.	.	.
Query SS confidence																	.	.	.																																										.	.	.	.	.
Query Sequence		L	T	G	V	N	K	P	M	R	V	R	A	L	H	A	.	.	.	Q	N	Q	P	T	E	T	A	N	A	G	Q	R	I	A	L	N	I	A	G	D	A	E	K	E	Q	I	N	R	G	D	W	L	L	A	D	V	P	P	E	P	.	.	.	.	.	F	T	R	V	I	V	E	L	Q	T	H	T	P	L	T	Q
Query Conservation																	.	.	.																																										.	.	.	.	.
Alig confidence																	.	.	.																					.																					.	.	.	.	.
Template Conservation																																								.
Template Sequence		I	Y	P	S	E	Q	S	C	I	V	D	K	I	Q	V	G	S	Q	Q	H	E	E	T	D	V	A	I	K	G	D	F	V	T	L	K	L	R	K	.	A	Y	P	E	D	I	Q	N	G	D	L	A	A	S	V	D	Y	S	S	I	H	S	A	Q	C	F	V	L	E	L	T	T	F	D	X	N	R	P	L	L	P
Template Known Secondary structure				T	T	T											T	T	T						S				T	T									S	.			G	G	G			T	T						T	T								S												S	S		B		T
Template Predicted Secondary structure																																								.
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.		.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300																						.	.	.	.	.	.	.	.	.				310	.	.	.	.	.	.	.	.	.							320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.											.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.											.	.	.	.	.	.
Query Sequence		W	Q	P	L	H	I	H	H	A	A	S	H	V	T	G	R	V	S	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	N	L	A	E	L	V	F	.	.	.	D	T	P	L	W	L	A	D	N	D	.	.	.	.	.	.	R	L	V	L	R	D	I	S	A	R	N
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.											.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.											.	.	.	.	.	.									.	.
Template Conservation																																																																															.	.
Template Sequence		G	T	P	F	I	L	F	I	G	V	K	E	Q	P	A	R	I	K	R	L	I	S	F	I	D	K	G	N	T	A	S	K	K	K	I	R	H	L	G	S	K	Q	R	A	F	V	E	I	E	L	I	E	V	K	R	W	I	P	L	L	T	A	H	E	N	D	R	L	G	R	V	V	L	R	K	D	G	.	.	R
Template Known Secondary structure		T								T	T																S	T	T				S	S			S		B		T	T											S		S	S							T	T	T		T	T	T	T							T	T	.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.			.
		331	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	A	G	A	R	V	V	M	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	A	A	G	K	I	S	E	I	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		600	.	.	.	.	.	.	.	.	.	610

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions