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Job DescriptionP14081
Confidence100.00%DateThu Jan 5 11:33:54 GMT 2012
Rank2Aligned Residues327
% Identity31%Templatec3mmpC_
PDB info PDB header:transferaseChain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVPGFIDVPGHEKFLSNMLAGVGGIDHALL
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Template Sequence  VNVGTIGHVDHGKTTLTAAITT. . . . . . VLAKTYGGTSHVEYDT. . . . PTRHYAHVDCPGHADYVKNMITGAAQMDGAIL
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   1012.......1020.........1030... ......1040......... 1050.........1060.........1070.........1080.
 
   81........90.........100.........110....... ..120.........130........ .140.........150.
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Query Sequence  VVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV. DEARVDEVERQVKEVLREYGF. . AEAKLFITAATEG. . . . . .
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Template Sequence  VVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE
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   1104.....1110.........1120.........1130.........1140.........1150.........1160.........1170.........1180...
 
   152.......160... ......170.........180.........190.........200.........210... ......220......
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Query Sequence  . . RGMDALREHLLQ. LPEREHASQHSFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDSLWLTGVN. . KPMRVRALHAQNQ
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Template Sequence  WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRK
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   1184.....1190.........1200.........1210.........1220.........1230.........1240.........1250.........1260...
 
   227..230.........240.........250.........260.........270..... ....280.........290........
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Query Sequence  PTETANAGQRIALNIAGDAEKEQINRGDWLLADVPPEPFTRVIVELQTH. . . . . . . . TPLTQWQPLHIHHAASHVTGRVS
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Template Sequence  LLDEGRAGENVGVLLRG. IKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE
Template Known Secondary structure  STT
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   1264.....1270.........1280 .........1290.........1300.........1310.........1320.........1330.........1340..
 
   299300 .........310.........320.........330.........340
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Query Sequence  LL. . . . . . . . . EDNLAELVFDTPLWLADNDRLVLRDISARNTLAGARVVML
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Template Sequence  LPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGG. . RTVGAGVVAKV
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   1343......1350.........1360.........1370.........1380 .........1390.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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