Job Description P14081 Confidence 100.00% Date Thu Jan 5 11:33:54 GMT 2012 Rank 14 Aligned Residues 309 % Identity 27% Template c3mcaA_ PDB info PDB header:translation regulation/hydrolase Chain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay Resolution 2.74 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	I	A	T	A	G	H	V	D	H	G	K	T	T	L	L	Q	A	I	T	G	V	N	A	D	R	L	P	E	E	K	K	R	G	M	T	I	D	L	G	Y	A	Y	W	P	Q	P	D	G	R	V	P	G	F	I	D	V	P	G	H	E	K	F	L	S	N	M	L	A	G	V	G	G	I	D	H	A	L	L
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	H	L	V	V	T	G	H	V	D	S	G	K	S	T	M	L	G	R	I	M	.	.	.	.	.	.	.	.	.	.	F	E	L	G	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	D	A	P	G	H	R	D	F	I	S	G	M	I	A	A	V	L	V	V	D	S	S	Q	N
Template Known Secondary structure										S	S	S	T										.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S	S											S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.											.	200	.	.	.	.																		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																							.	.																			.	.	.
Query SS confidence																																							.	.																			.	.	.
Query Sequence		V	V	A	C	D	D	G	V	M	A	Q	T	R	E	H	L	A	I	L	Q	L	T	G	N	P	M	L	T	V	A	L	T	K	A	D	R	V	.	.	D	E	A	R	V	D	E	V	E	R	Q	V	K	E	V	L	R	E	.	.	.	Y	G	F	A	E	A	K	L	F	I	T	A	A	T	E	G	R	G	M	D
Query Conservation																																							.	.																			.	.	.
Alig confidence																																							.	.																			.	.	.
Template Conservation
Template Sequence		N	F	E	R	G	F	L	E	N	G	Q	T	R	E	H	A	Y	L	L	R	A	L	G	I	S	E	I	V	V	S	V	N	K	L	D	L	M	S	W	S	E	D	R	F	Q	E	I	K	N	I	V	S	D	F	L	I	K	M	V	G	F	K	T	S	N	V	H	F	V	P	I	S	A	I	S	G	T	N	L	I
Template Known Secondary structure			S	S	T	T	S		S		S	S											S	S											G	G	G	G	T	T																	T	T	T	S				G	G	G								S	S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		156															.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	E	H	L	L	Q	L	P	E	R	E	H	A	S	Q	H	S	F	R	L	A	I	D	R	A	F	T	V	K	G	A	G	L	V	V	T	G	T	A	L	S	G	E	V	K	V	G	D	S	L	W	L	T	G	V	N	K	P	M	R	V	R	A	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template Conservation																																																.
Template Sequence		Q	K	D	S	S	D	L	Y	K	W	Y	K	G	P	T	L	L	S	A	L	D	Q	L	V	P	P	E	K	P	Y	R	K	P	L	R	L	S	I	D	D	V	Y	R	S	P	R	.	S	V	T	V	T	G	R	V	E	A	G	N	V	Q	V	N	Q	V	L	Y	D	V	S	S	Q	E	D	A	Y	V	K	N	V
Template Known Secondary structure		S					G	G	G	G	T			S									T	S				S		T	T	T	S													T	T	.											S				T	T						T	T	T	T
Template Predicted Secondary structure																																																.
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
		222	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure					.																																									.	.	.	.
Query SS confidence					.																																									.	.	.	.
Query Sequence		H	A	Q	.	N	Q	P	T	E	T	A	N	A	G	Q	R	I	A	L	N	I	A	G	D	A	E	K	E	Q	I	N	R	G	D	W	L	L	A	D	V	P	P	E	P	.	.	.	.	F	T	R	V	I	V	E	L	Q	T	H	T	P	L	T	Q	W	Q	P	L	H	I	H	H	A	A	S	H	V	T	G	R
Query Conservation					.																																									.	.	.	.
Alig confidence					.																				.																					.	.	.	.
Template Conservation																									.
Template Sequence		I	R	N	S	D	P	S	S	T	W	A	V	A	G	D	T	V	T	L	Q	L	A	D	.	I	E	V	N	Q	L	R	P	G	D	I	L	S	N	Y	E	N	P	V	R	R	V	R	S	F	V	A	E	I	Q	T	F	D	I	H	G	P	I	L	S	G	S	T	L	V	L	H	L	G	R	T	V	T	S	V	S
Template Known Secondary structure				S	S	S		S						T	T								S	S	.	S		G	G	G			T	T						S	S	S						S										S		S	S				T	T								S	S
Template Predicted Secondary structure																									.
Template SS confidence
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.		.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
		297	.	.	300														.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.								.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Query Sequence		V	S	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	N	L	A	E	L	V	F	D	T	P	L	W	L	A	.	.	.	.	.	.	.	D	N	D	R	L	V	L	R	D	I	S	A	R	N	T	L	A	G	A	R	V	V	M	L
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.												.	.
Template Conservation																																																					.	.
Template Sequence		L	K	I	V	T	V	N	N	K	R	S	R	H	I	A	S	R	K	R	A	L	V	R	I	S	F	L	D	G	L	F	P	L	C	L	A	E	E	C	P	A	L	G	R	F	I	L	R	R	S	G	.	.	D	T	V	A	A	G	I	V	K	E	L
Template Known Secondary structure							S	S	S	S			S				S	S										S	S	S							T	T	T											S	S	S	.	.	S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580			.	.	.	.	.	.	.	.	.	590	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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