Return to main results Retrieve Phyre Job Id

Job DescriptionP14081
Confidence98.85%DateThu Jan 5 11:33:54 GMT 2012
Rank265Aligned Residues155
% Identity18%Templatec3cpjB_
PDB info PDB header:protein transportChain: B: PDB Molecule:gtp-binding protein ypt31/ypt8; PDBTitle: crystal structure of ypt31 in complex with yeast rab-gdi
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  IATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVPGFIDVPGHEKFLSNMLAGVGGIDHALLVV
Query Conservation 














 



   
   

  







 
         
 


 



 

  

 
    
 




Alig confidence 



























........











































Template Conservation 




   






 
     
     ........                                            
Template Sequence  IVLIGDSGVGKSNLLSRFTKNEFNMGVE. . . . . . . . FATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVY
Template Known Secondary structure  S
TTSS






S........TT

TTTTTTT


GGGTTT

Template Predicted Secondary structure 












........























Template SS confidence 















































































   16...20.........30.........40... ......50.........60.........70.........80.......
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  ACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARVDEVERQVKEVLREYGFAEAKLFITAATEGRGMDALREHLL
Query Conservation 

  
   

 


 
   


   





 


  
  
    

   
        


 


 

 

  
   
 
Alig confidence 

































..

















...









.











Template Conservation 
                        
    
 
 ..              
   ...     
 


.   
 
 
  
 
Template Sequence  DSKSSSYENCNHWLSELRENADVAVGLIGNKSDL. . AHLRAVPTEESKTFAQEN. . . QLLFTETSAL. SENVDKAFEELI
Template Known Secondary structure 







GGG..GGG

S
T...T




.


Template Predicted Secondary structure 


















..







...




.


Template SS confidence 















































































   94.....100.........110.........120....... ..130.........140..... ....150..... ....160.......
 
   163......170.
Predicted Secondary structure 







Query SS confidence 








Query Sequence  QLPEREHAS
Query Conservation           
Alig confidence 








Template Conservation    
  
   
Template Sequence  NTIYQKVPT
Template Known Secondary structure  TT



Template Predicted Secondary structure 


Template SS confidence 








   172.......180
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions