Job Description P14081 Confidence 99.00% Date Thu Jan 5 11:33:54 GMT 2012 Rank 235 Aligned Residues 152 % Identity 11% Template c3clvA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rab5 protein, putative; PDBTitle: crystal structure of rab5a from plasmodium falciparum,2 pfb0500c Resolution 1.89 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.								.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.
Query Sequence		I	A	T	A	G	H	V	D	H	G	K	T	T	L	L	Q	A	I	T	G	V	N	A	D	R	L	P	E	E	K	K	R	G	M	T	I	D	L	G	Y	A	Y	W	P	Q	P	D	G	R	V	.	.	.	.	.	.	.	P	G	F	I	D	V	P	G	H	E	K	F	L	S	N	M	L	A	G	V	G	G	I
Query Conservation																																																				.	.	.	.	.	.	.
Alig confidence																								.	.	.																										.	.	.	.	.	.	.
Template Conservation																								.	.	.
Template Sequence		T	V	L	L	G	E	S	S	V	G	K	S	S	I	V	L	R	L	T	K	D	T	.	.	.	F	H	E	N	T	N	T	T	I	G	A	S	F	C	T	Y	V	V	N	L	N	D	N	Y	N	E	N	L	C	N	I	K	F	D	I	W	D	T	A	G	Q	E	R	Y	A	S	I	V	P	L	Y	Y	R	G	A
Template Known Secondary structure								T	T	S	S											S		.	.	.			S	S						S										T	T					T	T	T											T	T	G	G	G		T	T	T						T	T
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	A	L	L	V	V	A	C	D	D	G	V	M	A	Q	T	R	E	H	L	A	I	L	Q	L	T	G	N	P	M	L	T	V	A	L	T	K	A	D	R	V	D	E	A	R	V	D	E	V	E	R	Q	V	K	E	V	L	R	E	Y	G	F	A	E	A	K	L	F	I	T	A	A	T	E	G	R	G	M	D
Query Conservation
Alig confidence																																																												.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		T	C	A	I	V	V	F	D	I	S	N	S	N	T	L	D	R	A	K	T	W	V	N	Q	L	K	I	S	S	N	Y	I	I	I	L	V	A	N	K	I	D	K	N	F	Q	V	D	I	L	E	V	Q	K	Y	A	Q	D	N	.	.	.	.	.	.	N	L	L	F	I	Q	T	S	A	K	T	G	T	N	I	K
Template Known Secondary structure		S								T	T																			S											T	T					S												T	.	.	.	.	.	.	T								T	T	T		T	T
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.							.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		156	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	R	E	H	L	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	I	F	Y	M	L	A	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions