Job Description P14081 Confidence 99.17% Date Thu Jan 5 11:33:54 GMT 2012 Rank 192 Aligned Residues 155 % Identity 14% Template c3bbpA_ PDB info PDB header:protein transport/splicing Chain: A: PDB Molecule:ras-related protein rab-6a; PDBTitle: rab6-gtp:gcc185 rab binding domain complex Resolution 3.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		I	A	T	A	G	H	V	D	H	G	K	T	T	L	L	Q	A	I	T	G	V	N	A	D	R	L	P	E	E	K	K	R	G	M	T	I	D	L	G	Y	A	Y	W	P	Q	P	D	G	R	V	P	G	F	I	D	V	P	G	H	E	K	F	L	S	N	M	L	A	G	V	G	G	.	I	D	H	A	L	L	V
Query Conservation																																																																										.
Alig confidence																								.	.	.																																																.
Template Conservation																								.	.	.
Template Sequence		L	V	F	L	G	E	Q	S	V	G	K	T	S	L	I	T	R	F	M	Y	D	S	.	.	.	F	D	N	T	Y	Q	A	T	I	G	I	D	F	L	S	K	T	M	Y	L	E	D	R	T	V	R	L	Q	L	W	D	T	A	G	L	E	R	F	R	S	L	I	P	S	Y	I	R	D	S	T	V	A	V	V	V
Template Known Secondary structure							S	T	T	S	S										T	S		.	.	.				S						S											T	T													S	S	G	G	G	T	T						T	T		S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		V	A	C	D	D	G	V	M	A	Q	T	R	E	H	L	A	I	L	Q	L	T	.	.	.	G	N	P	M	L	T	V	A	L	T	K	A	D	R	V	D	E	A	R	V	D	E	V	E	R	Q	V	K	E	V	L	R	E	Y	G	F	A	E	A	K	L	F	I	T	A	A	T	E	G	R	G	M	D	A	L	R
Query Conservation																							.	.	.
Alig confidence																							.	.	.																		.	.																.	.	.
Template Conservation																																											.	.																.	.	.
Template Sequence		Y	D	I	T	N	V	N	S	F	Q	Q	T	T	K	W	I	D	D	V	R	T	E	R	G	S	D	V	I	I	M	L	V	G	N	K	T	D	L	A	D	K	.	.	R	Q	V	S	I	E	E	G	E	R	K	A	K	E	L	.	.	.	N	V	M	F	I	E	T	S	A	K	A	G	Y	N	V	K	Q	L	F
Template Known Secondary structure				T	T							T													T	T	S	S									G	G	G		T	T	.	.			S												T	.	.	.	T							B	T	T	T	T	B	T
Template Predicted Secondary structure																																											.	.																.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		159	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	L	L	Q	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	V	A	A	A	L
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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