Job Description P14081 Confidence 98.79% Date Thu Jan 5 11:33:54 GMT 2012 Rank 273 Aligned Residues 115 % Identity 12% Template c2yc2D_ PDB info PDB header:transport protein Chain: D: PDB Molecule:small rab-related gtpase; PDBTitle: intraflagellar transport complex 25-27 from chlamydomonas Resolution 2.59 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.						.	.	.	100	.	.	.	.
Predicted Secondary structure																		.	.	.																																															.	.	.	.	.									.	.
Query SS confidence																		.	.	.																																															.	.	.	.	.									.	.
Query Sequence		G	M	T	I	D	L	G	Y	A	Y	W	P	Q	P	D	G	.	.	.	R	V	P	G	F	I	D	V	P	G	H	E	K	F	L	S	N	M	L	A	G	V	G	G	I	D	H	A	L	L	V	V	A	C	D	D	G	V	M	A	Q	T	R	E	H	L	.	.	.	.	.	A	I	L	Q	L	T	G	N	.	.
Query Conservation																		.	.	.																																															.	.	.	.	.									.	.
Alig confidence																		.	.	.																																					.	.	.								.	.	.	.	.									.	.
Template Conservation																																																									.	.	.
Template Sequence		R	C	K	V	A	V	V	V	A	P	V	T	I	P	D	T	T	V	S	V	E	L	F	L	L	D	T	A	G	S	D	L	Y	K	E	Q	I	S	Q	Y	W	N	G	V	Y	Y	A	I	L	V	F	D	V	S	S	.	.	.	M	E	S	F	E	S	C	K	A	W	F	E	L	L	K	S	A	R	P	D	R	E
Template Known Secondary structure															T	T	S	S										T	T	T	T								S	T	T													T	T		.	.	.																			S		T	T
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
				105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure		.	.																																																.	.
Query SS confidence		.	.																																																.	.
Query Sequence		.	.	P	M	L	T	V	A	L	T	K	A	D	R	V	D	E	A	R	V	D	E	V	E	R	Q	V	K	E	V	L	R	E	Y	G	F	A	E	A	K	L	F	I	T	A	A	T	E	G	.	.	R	G	M	D	A	L	R	E	H	L	L	Q
Query Conservation		.	.																																																.	.
Alig confidence		.	.																									.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	P	L	R	A	V	L	V	A	N	K	T	Q	V	R	L	D	M	A	Q	D	W	A	T	T	N	.	.	.	.	.	.	.	.	.	.	.	T	L	D	F	F	D	V	S	A	A	D	A	P	F	L	S	I	A	T	T	F	Y	R	N	Y	E
Template Known Secondary structure		S																										.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.												.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions