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Job DescriptionP14081
Confidence100.00%DateThu Jan 5 11:33:54 GMT 2012
Rank18Aligned Residues333
% Identity27%Templatec2plfA_
PDB info PDB header:translationChain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50 ...
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Query Sequence  MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG. . . . . . . . . . . . . . . . . . . . . . . . . . . RVP
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Template Sequence  VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI
Template Known Secondary structure  SSTTSSSTTSS
STT
TTTTTT


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TTS
TTTTSSS

GGGT

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   10.........20.........30.........40.........50.........60.........70.........80.........
 
   54.....60.........70.........80........ .90.........100.........110.........120.........130..
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Query Sequence  GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGV. MAQTREHLAILQLTGNPMLTVALTKADRVDEARVDEVERQVKEV
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Template Sequence  SFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF
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SS


SSSTTS
STTS
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TT

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TT
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   90.........100.........110.........120.........130.........140.........150.........160.........
 
   133......140.........150.........160.........170. ........180.........190.........200...
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Query Sequence  LREYGFAEAKLFITAATEGRGMDALREHLLQLPEREHAS. . . . . . . . . QHSFRLAIDRAFTVKGAGLVVTGTALSGEVKV
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Template Sequence  TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKV
Template Known Secondary structure  STTSGGGG


BTTTTBSS





TTS





TT

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   170.........180.........190.........200.........210.........220.........230.........240.........
 
   204.....210..... ....220.........230.........240.. .......250.........260. ......
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Query Sequence  GDSLWLTGVNKP. . . . . . . . . . . . MRVRALHAQNQPTETANAGQRIALNIA. . . GDAEKEQINRGDWLLADVP. PEPFTR
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Template Sequence  DQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPS. LTKADNLLGSIITLADAEVPVLWN
Template Known Secondary structure  T

GGGS


TTS
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   250.........260.........270.........280.........290.........300.... .....310.........320........
 
   268.270..... ....280.........290.........300.........310......... 320.........
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Query Sequence  VIVELQTH. . . . . . . . . . . . TPLTQWQPLHIHHAASHVTGRVSLLEDNLAELVFDTPLWLADND. . . . . . RLVLRDISAR
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Template Sequence  IRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRW. . .
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TTT





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   329330.........340.........350.........360.........370.........380.........390.........400.....
 
   330.......
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Query Sequence  NTLAGARV
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Template Sequence  RMIGWGLV
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   406...410...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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