Job Description P14081 Confidence 98.87% Date Thu Jan 5 11:33:54 GMT 2012 Rank 259 Aligned Residues 162 % Identity 13% Template c2hxsA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:ras-related protein rab-28; PDBTitle: crystal structure of rab28a gtpase in the inactive (gdp-3'p-2 bound) form Resolution 1.10 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		I	A	T	A	G	H	V	D	H	G	K	T	T	L	L	Q	A	I	T	G	V	N	A	D	R	L	P	E	E	K	K	R	G	M	T	I	D	L	G	Y	A	Y	W	P	Q	P	D	G	R	V	P	G	F	I	D	V	P	G	H	E	K	F	.	.	L	S	N	M	L	A	G	V	G	G	I	D	H	A	L	L
Query Conservation																																																																.	.
Alig confidence																								.	.	.																																						.	.
Template Conservation																								.	.	.
Template Sequence		I	V	V	L	G	D	G	A	S	G	K	T	S	L	T	T	C	F	A	Q	E	T	.	.	.	F	G	K	Q	Y	K	Q	T	I	G	L	D	F	F	L	R	R	I	T	L	P	G	N	L	N	V	T	L	Q	I	W	D	I	G	G	Q	T	I	G	G	K	M	L	D	K	Y	I	Y	G	A	Q	G	V	L	L
Template Known Secondary structure								T	T	S	S										G	G	G	.	.	.	T	T						T	T	T	S	S									T	T	T											T	T			T	T		T	T						T	T		S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		81	.	.	.	.	.	.	.	.	90							.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence		V	V	A	C	D	D	G	V	M	A	.	.	.	.	.	.	Q	T	R	E	H	L	A	I	L	Q	L	T	G	N	P	M	L	T	V	A	L	T	K	A	D	R	V	D	E	A	R	V	D	E	V	E	R	Q	V	K	E	V	L	R	E	Y	G	F	A	E	A	K	L	F	I	T	A	A	T	E	G	R	G	M
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																											.	.																			.	.	.
Template Conservation																																												.	.																			.	.	.
Template Sequence		V	Y	D	I	T	N	Y	Q	S	F	E	N	L	E	D	W	Y	T	V	V	K	K	V	S	E	E	S	E	T	Q	P	L	V	A	L	V	G	N	K	I	D	L	.	.	E	H	M	R	T	I	K	P	E	K	H	L	R	F	C	Q	E	N	.	.	.	G	F	S	S	H	F	V	S	A	K	T	G	D	S	V
Template Known Secondary structure					T	T							T																T												G	G	G	.	.	G	G	G		S	S													.	.	.	T								T	T	T		T	T
Template Predicted Secondary structure																																												.	.																			.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.				.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	R	E	H	L	L	Q	L	P	E	R	E	H	A	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	C	F	Q	K	V	A	A	E	I	L	G	I	K	L	N	K
Template Known Secondary structure													T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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