Job Description P14081 Confidence 100.00% Date Thu Jan 5 11:33:54 GMT 2012 Rank 13 Aligned Residues 302 % Identity 29% Template c2hdnJ_ PDB info PDB header:translation Chain: J: PDB Molecule:elongation factor ef-tu; PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution Resolution 2.80 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	T	I	D	L	G	Y	A	Y	W	P	Q	P	D	G	R	V	P	G	F	I	D	V	P	G	H	E	K	F	L	S	N	M	L	A	G	V	G	G	I	D	H	A	L	L	V	V	A	C	D	D	G	V	M	A	Q	T	R	E	H	L	A	I	L	Q	L	T	G	N	P	M	L	T	V	A	L	T	K	A
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence		G	I	T	I	N	T	S	H	V	E	Y	D	T	P	T	.	R	H	Y	A	H	V	D	C	P	G	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C
Template Known Secondary structure															S	S	.									S	S											T	S	S			S	S							T	T	T		S															T											T
Template Predicted Secondary structure																	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		115	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.										.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure					.																						.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence					.																						.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		D	R	V	.	D	E	A	R	V	D	E	V	E	R	Q	V	K	E	V	L	R	E	Y	G	F	.	.	A	E	A	K	L	F	I	T	A	A	T	E	G	R	G	M	.	.	.	.	.	.	.	.	.	D	A	L	R	E	H	L	L	Q	L	P	E	R	E	H	A	S	Q	H	S	F	R	L	A	I	D	R	A
Query Conservation					.																						.	.																	.	.	.	.	.	.	.	.	.
Alig confidence					.																						.	.																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y	D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E	R	A	I	D	K	P	F	L	L	P	I	E	D	V
Template Known Secondary structure		T	T																					T	T	S		T	T	T														T																			S						G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		F	T	V	K	G	A	G	L	V	V	T	G	T	A	L	S	G	E	V	K	V	G	D	S	L	W	L	T	G	V	N	.	.	K	P	M	R	V	R	A	L	H	A	Q	N	Q	P	T	E	T	A	N	A	G	Q	R	I	A	L	N	I	A	G	D	A	E	K	E	Q	I	N	R	G	D	W	L	L	A	D	V
Query Conservation																																	.	.
Alig confidence																																	.	.																															.
Template Conservation																																																																	.
Template Sequence		F	S	I	S	G	R	G	T	V	V	T	G	R	V	E	R	G	I	I	K	V	G	E	E	V	E	I	V	G	I	K	E	T	Q	K	S	T	C	T	G	V	E	M	F	R	K	L	L	D	E	G	R	A	G	E	N	V	G	V	L	L	R	G	.	I	K	R	E	E	I	E	R	G	Q	V	L	A	K	P	G
Template Known Secondary structure					T	T	T										B	S				T	T							S	S	S													T	T				S				T	T								S	S	.			T	T	S			T	T					S	T	T
Template Predicted Secondary structure																																																																	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.									.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300										.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Query Sequence		P	P	E	P	F	T	R	V	I	V	E	L	.	.	.	.	.	.	.	.	Q	T	H	T	P	L	T	Q	W	Q	P	L	H	I	H	H	A	A	S	H	V	T	G	R	V	S	L	L	.	.	.	.	.	.	.	.	.	E	D	N	L	A	E	L	V	F	D	T	P	L	W	L	A	D	N	D	R	L	V	L
Query Conservation														.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	K	P	H	T	K	F	E	S	E	V	Y	I	L	S	K	D	E	G	G	R	H	T	P	F	F	K	G	Y	R	P	Q	F	Y	F	R	T	T	D	V	T	G	T	I	E	L	P	E	G	V	E	M	V	M	P	G	D	N	I	K	M	V	V	T	L	I	H	P	I	A	M	D	D	G	L	R	F	A	I
Template Known Secondary structure		S	S															T	T	T	T			S	S				T	T								T	T											T	T						T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	I	S	A	R	N	T	L	A	G	A	R	V	V	M	L
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		R	E	G	G	.	.	R	T	V	G	A	G	V	V	A	K	V
Template Known Secondary structure				T	T	.	.
Template Predicted Secondary structure						.	.
Template SS confidence
		377	.	.	380			.	.	.	.	.	.	.	.	.	390	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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