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Job DescriptionP14081
Confidence100.00%DateThu Jan 5 11:33:54 GMT 2012
Rank32Aligned Residues236
% Identity25%Templatec2h5eB_
PDB info PDB header:translationChain: B: PDB Molecule:peptide chain release factor rf-3; PDBTitle: crystal structure of e.coli polypeptide release factor rf3
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  IATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVPGFIDVPGHEKFLSNMLAGVGGIDHALLVV
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Template Sequence  FAIISHPDAGKTTITEKVL. . . . . . . . . . . . . LFGQTTSVMQFPYHD. CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVI
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   16...20.........30.... .....40......... 50.........60.........70.........80.
 
   83......90.........100.........110.........120.........130.........140
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Query Sequence  ACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARVDEVERQVKEVLREYGFAE. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  DAAKGVEDRTRKLMEVTRLRDTP. ILTFMNKLDRDIRD. PMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETY
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   114.....120.........130...... ...140.........150 .........160.........170.........180.........190.
 
   141........150.........160
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AKLFITAATEGRGMDALREH
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Template Sequence  LYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDG
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   192.......200.........210.........220.........230.........240.........250.........260.........270.
 
   161........ 170.........180.........190.........200.........210.........220.........230
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Query Sequence  LLQLPEREH. . . . . . . . . . ASQHSFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDSLWLTGVNKPMRVRALHAQNQPTET
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Template Sequence  LVEWAPAPMPRQTDTRTVEASEDKFTGFVFKI. . . . . QARVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMA. VEE
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   272.......280.........290.........300... ......310.........320.........330.........340.. ...
 
   231........240.........250.........260.....
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Query Sequence  ANAGQRIALNIAGDAEKEQINRGDWLLADVPPEPF
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Template Sequence  AYPGDILGL. . . . . HNHGTIQIGDTFTQGEMMKFT
Template Known Secondary structure  B
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   359360....... ..370.........380........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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