Job Description P14081 Confidence 100.00% Date Thu Jan 5 11:33:54 GMT 2012 Rank 3 Aligned Residues 318 % Identity 22% Template c2elfA_ PDB info PDB header:translation Chain: A: PDB Molecule:protein translation elongation factor 1a; PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei Resolution 1.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	T	A	G	H	V	D	H	G	K	T	T	L	L	Q	A	I	T	G	V	N	A	D	R	L	P	E	E	K	K	R	G	M	T	I	D	L	G	Y	A	Y	W	P	Q	P	D	G	R	V	P	G	F	I	D	V	P	G	H	E	K	F	L	S	N	M	L	A	G	V	G	G	I	D	H	A	L	L	V	V
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		V	A	I	I	G	T	E	K	S	G	R	T	S	L	A	A	N	L	G	.	.	.	.	.	.	.	.	.	.	.	K	K	G	T	S	S	D	I	T	X	Y	N	N	D	K	.	E	G	R	N	X	V	F	V	D	A	H	S	Y	P	K	T	L	K	S	L	I	T	A	L	N	I	S	D	I	A	V	L	C	I
Template Known Secondary structure							S	T	T	S	S							T	T	S	.	.	.	.	.	.	.	.	.	.	.						S	S	S							S	.	S	S	S								T	T	T	T	T											T		S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.												.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.
Query Sequence		A	C	D	D	G	V	M	A	Q	T	R	E	H	L	A	I	L	Q	L	T	G	N	P	M	L	T	V	A	L	T	K	A	D	R	V	D	E	A	R	V	D	E	V	E	R	Q	V	K	E	V	L	R	E	Y	G	F	A	E	A	K	L	F	I	T	A	A	T	E	G	.	.	.	.	.	R	G	M	D	A	L
Query Conservation																																																																							.	.	.	.	.
Alig confidence				.																																																																			.	.	.	.	.
Template Conservation				.
Template Sequence		P	P	.	Q	G	L	D	A	H	T	G	E	C	I	I	A	L	D	L	L	G	F	K	H	G	I	I	A	L	T	R	S	D	S	T	H	X	H	A	I	D	E	L	K	A	K	L	K	V	I	T	S	G	T	V	L	Q	D	W	E	C	I	S	L	N	T	N	K	S	A	K	N	P	F	E	G	V	D	E	L
Template Known Secondary structure			T	.	T																T	T											G	G	G	S																T	T	T	S	T	T	T	T										T	T	S	S	S	T	T	T	T
Template Predicted Secondary structure				.
Template SS confidence
		72	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		158	.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure											.	.	.	.	.
Query SS confidence											.	.	.	.	.
Query Sequence		R	E	H	L	L	Q	L	P	E	.	.	.	.	.	R	E	H	A	S	Q	H	S	F	R	L	A	I	D	R	A	F	T	V	K	G	A	G	L	V	V	T	G	T	A	L	S	G	E	V	K	V	G	D	S	L	W	L	T	G	V	N	K	P	M	R	V	R	A	L	H	A	Q	N	Q	P	T	E	T	A	N
Query Conservation											.	.	.	.	.
Alig confidence											.	.	.	.	.																		.	.	.
Template Conservation																																	.	.	.
Template Sequence		K	A	R	I	N	E	V	A	E	K	I	E	A	E	N	A	E	L	N	S	L	P	A	R	I	F	I	D	H	A	F	.	.	.	N	V	T	C	V	V	L	G	V	V	K	Q	G	I	S	K	D	K	D	K	T	K	I	F	P	L	D	R	D	I	E	I	R	S	I	Q	S	H	D	V	D	I	D	S	A	P
Template Known Secondary structure																			G	G	G	S											.	.	.													S				T	T							T	T	T											T	T				S
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																											.																												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.																												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	Q	R	I	A	L	N	I	A	G	D	A	E	K	E	Q	I	N	R	G	D	W	L	L	A	D	V	P	P	E	P	F	T	R	V	I	V	E	L	Q	.	T	H	T	P	L	T	Q	W	Q	P	L	H	I	H	H	A	A	S	H	V	T	G	R	V	S	L	L	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																											.																												.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																														.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		A	G	T	R	V	G	X	R	L	K	N	.	V	Q	A	K	D	I	E	R	G	F	I	I	S	D	K	E	I	V	T	T	D	Y	T	L	E	C	T	V	S	K	F	T	K	K	I	E	P	A	S	V	L	H	L	F	V	G	L	Q	S	E	P	V	R	V	E	K	I	L	V	D	G	N	E	V	E	E	A	K
Template Known Secondary structure		T	T									S	.			G	G	G			T	T					S																T	T	S			B		T	T								T	T													T	T				S		B
Template Predicted Secondary structure													.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
				301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																														.
Query SS confidence		.	.																														.
Query Sequence		.	.	E	D	N	L	A	E	L	V	F	D	T	P	L	W	L	A	D	N	D	R	L	V	L	R	D	I	S	A	R	.	N	T	L	A	G	A	R	V
Query Conservation		.	.																														.
Alig confidence		.	.																														.
Template Conservation
Template Sequence		P	G	S	T	C	V	L	E	L	S	G	N	K	K	L	A	Y	S	K	Q	D	R	F	L	L	A	N	L	D	L	T	Q	R	F	A	A	Y	G	F	S
Template Known Secondary structure		T	T																	T	T	S							T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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