Job Description P14081 Confidence 100.00% Date Thu Jan 5 11:33:54 GMT 2012 Rank 11 Aligned Residues 345 % Identity 28% Template c1wb1C_ PDB info PDB header:protein synthesis Chain: C: PDB Molecule:translation elongation factor selb; PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp Resolution 3.0 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		M	I	I	A	T	A	G	H	V	D	H	G	K	T	T	L	L	Q	A	I	T	G	V	N	.	.	.	.	A	D	R	L	P	E	E	K	K	R	G	M	T	I	D	L	G	Y	A	Y	W	P	Q	P	D	G	R	V	P	G	F	I	D	V	P	G	H	E	K	F	L	S	N	M	L	A	G	V	G	G	I	D
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.																								.
Template Conservation																																																					.
Template Sequence		I	N	L	G	I	F	G	H	I	D	H	G	K	T	T	L	S	K	V	L	T	E	I	A	S	T	S	A	H	D	K	L	P	E	S	Q	K	R	G	I	T	I	D	I	G	F	S	A	F	K	L	.	E	N	Y	R	I	T	L	V	D	A	P	G	H	A	D	L	I	R	A	V	V	S	A	A	D	I	I	D
Template Known Secondary structure										T	T	S	S	T	T							T	T	T	S	S		S	S		S	S	S	S	T	T	T	T	S						S	S							.	T	T									S	S	S										S		S	S
Template Predicted Secondary structure																																																					.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		H	A	L	L	V	V	A	C	D	D	G	V	M	A	Q	T	R	E	H	L	A	I	L	Q	L	T	G	N	P	M	L	T	V	A	L	T	K	A	D	R	V	D	E	A	R	V	D	E	V	E	R	Q	V	K	E	V	L	R	E	Y	G	.	F	A	E	A	K	L	F	I	T	A	A	T	E	G	R	G	M	D
Query Conservation																																																															.
Alig confidence																															.																																.
Template Conservation																															.
Template Sequence		L	A	L	I	V	V	D	A	K	E	G	P	K	T	Q	T	G	E	H	M	L	I	L	D	H	F	N	I	P	.	I	I	V	V	I	T	K	S	D	N	A	G	T	E	E	I	K	R	T	E	M	I	M	K	S	I	L	Q	S	T	H	N	L	K	N	S	S	I	I	P	I	S	A	K	T	G	F	G	V	D
Template Known Secondary structure									T	T	T																T	T			.									T	T	S																			S	S	G	G	G	G								T	T	T	T	T	T
Template Predicted Secondary structure																															.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		156	.	.	.	160	.	.	.	.	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		A	L	R	E	H	L	L	Q	L	P	E	.	.	.	R	E	H	A	S	Q	H	S	F	R	L	A	I	D	R	A	F	T	V	K	G	A	G	L	V	V	T	G	T	A	L	S	G	E	V	K	V	G	D	S	L	W	L	T	G	V	N	K	P	M	R	V	R	A	L	H	A	Q	N	Q	P	T	E	T	A	N
Query Conservation													.	.	.
Alig confidence													.	.	.
Template Conservation
Template Sequence		E	L	K	N	L	I	I	T	T	L	N	N	A	E	I	I	R	N	T	E	S	Y	F	K	M	P	L	D	H	A	F	P	I	K	G	A	G	T	V	V	T	G	T	I	N	K	G	I	V	K	V	G	D	E	L	K	V	L	P	I	N	M	S	T	K	V	R	S	I	Q	Y	F	K	E	S	V	M	E	A	K
Template Known Secondary structure												T	T	S							S	S													T	T	T										B	S				S	S						T	T	T	T											S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																											.	.	.	.																												.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.																												.	.	.	.	.	.	.	.
Query Sequence		A	G	Q	R	I	A	L	N	I	A	G	D	A	E	K	E	Q	I	N	R	G	D	W	L	L	A	D	V	P	P	E	P	F	T	R	V	I	V	E	L	Q	.	.	.	.	T	H	T	P	L	T	Q	W	Q	P	L	H	I	H	H	A	A	S	H	V	T	G	R	V	S	L	L	.	.	.	.	.	.	.	.
Query Conservation																																											.	.	.	.																												.	.	.	.	.	.	.	.
Alig confidence													.																														.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		A	G	D	R	V	G	M	A	I	Q	G	.	V	D	A	K	Q	I	Y	R	G	I	L	T	S	K	D	T	K	L	Q	T	V	D	K	I	V	A	K	I	K	I	S	D	I	F	K	Y	N	L	T	P	K	M	K	V	H	L	N	V	G	M	L	I	V	P	A	V	A	V	P	F	K	K	V	T	F	G	K	T
Template Known Secondary structure		S	S									S	.	S		G	G	G									T	T															B		T	T			S	B			S	S								T	T																S	S
Template Predicted Secondary structure													.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
												301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.			.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																								.									.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																								.									.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	E	D	N	L	A	E	L	V	F	D	T	P	L	W	L	A	D	N	D	R	L	V	L	.	R	D	I	S	A	R	N	T	.	.	L	A	G	A	R	V	V	M	L	N	P	P	R	R	G	K	R
Query Conservation		.	.	.	.	.	.	.	.	.	.																								.									.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																								.									.	.
Template Conservation
Template Sequence		E	E	N	I	I	L	N	E	V	I	S	G	N	E	Y	A	F	E	L	E	E	K	V	L	A	E	V	G	D	R	V	L	I	T	R	L	D	L	P	P	T	T	L	R	I	G	H	G	L	I	E	E	F	K	P	I	K	D	L	N	I
Template Known Secondary structure								S			B	S	S	B														T	T									S	S		S	S	S														T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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