Job Description P14081 Confidence 100.00% Date Thu Jan 5 11:33:54 GMT 2012 Rank 10 Aligned Residues 339 % Identity 30% Template c1skqB_ PDB info PDB header:translation Chain: B: PDB Molecule:elongation factor 1-alpha; PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.																		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	I	A	T	A	G	H	V	D	H	G	K	T	T	L	L	Q	A	I	T	G	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	R	L	P	E	E	K	K	R	G	M	T	I	D	L	G	Y	A	Y	W	P	Q	P	D	G	R	V	P	G	F	I	D	V	P	G	H	E	K
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																																																																		.
Template Sequence		L	N	L	I	V	I	G	H	V	D	H	G	K	S	T	L	V	G	R	L	L	M	D	R	G	F	I	D	E	K	T	V	K	E	A	E	E	A	A	K	K	L	G	K	E	S	E	K	F	A	F	L	L	D	R	L	K	E	E	M	R	F	E	T	.	K	K	Y	F	F	T	I	I	D	A	P	G	H	R	D
Template Known Secondary structure									S	T	T	S	S													B				S	S												T	T		T	T												T							.	S	S									T	T	S	T	T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.								.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.																															.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.																															.	.	.	.
Query Sequence		F	L	S	N	M	L	A	G	V	G	G	I	D	H	A	L	L	V	V	A	C	D	D	G	.	.	.	.	.	.	.	V	M	A	Q	T	R	E	H	L	A	I	L	Q	L	T	G	N	P	M	L	T	V	A	L	T	K	A	D	R	V	.	.	.	.	D	E	A	R	V	D	E	V	E	R	Q	V	K	E	V
Query Conservation																										.	.	.	.	.	.	.																															.	.	.	.
Alig confidence																										.	.	.	.	.	.	.																															.	.	.	.
Template Conservation
Template Sequence		F	V	K	N	M	I	T	G	A	S	Q	A	D	A	A	I	L	V	V	S	A	K	K	G	E	Y	E	A	G	M	S	V	E	G	Q	T	R	E	H	I	I	L	A	K	T	M	G	L	D	Q	L	I	V	A	V	N	K	M	D	L	T	E	P	P	Y	D	E	K	R	Y	K	E	I	V	D	Q	V	S	K	F
Template Known Secondary structure									S	S	S			S									S	T	T						S	S	S	S													T	T											G	G	G	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		133	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.													.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	E	Y	G	F	.	.	A	E	A	K	L	F	I	T	A	A	T	E	G	R	G	M	D	A	.	.	.	.	.	.	.	.	.	.	.	.	L	R	E	H	L	L	Q	L	P	E	R	E	H	A	S	Q	H	S	F	R	L	A	I	D	R	A	F	T	V	K	G	A	G	L	V	V	T	G	T	A	L	S
Query Conservation								.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	R	S	Y	G	F	N	T	N	K	V	R	F	V	P	V	V	A	P	S	G	D	N	I	T	H	K	S	E	N	M	K	W	Y	N	G	P	T	L	E	E	Y	L	D	Q	L	E	L	P	P	K	P	V	D	K	P	L	R	I	P	I	Q	D	V	Y	S	I	S	G	V	G	T	V	P	V	G	R	V	E	S
Template Known Secondary structure					T	T				T	T							B	T	T	T	T	B	T	T	T	B			S	T	T	T	T			S									T							G	G	G	S			B										T	T	T										B
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.
Query SS confidence																																																																				.	.	.	.
Query Sequence		G	E	V	K	V	G	D	S	L	W	L	T	G	V	N	K	P	M	R	V	R	A	L	H	A	Q	N	Q	P	T	E	T	A	N	A	G	Q	R	I	A	L	N	I	A	G	D	A	E	K	E	Q	I	N	R	G	D	W	L	L	A	D	V	P	P	E	P	.	.	.	.	F	T	R	V	I	V	E	L	Q	T
Query Conservation																																																																				.	.	.	.
Alig confidence																																															.																					.	.	.	.
Template Conservation																																															.
Template Sequence		G	V	L	K	V	G	D	K	I	V	F	M	P	A	G	K	V	G	E	V	R	S	I	E	T	H	H	T	K	M	D	K	A	E	P	G	D	N	I	G	F	N	V	R	G	.	V	E	K	K	D	I	K	R	G	D	V	V	G	H	P	N	N	P	P	T	V	A	D	E	F	T	A	R	I	I	V	V	W	H
Template Known Secondary structure		S				T	T							T	T	T											S	S				S				T	T									S	.			G	G	G			T	T					B	T	T	B
Template Predicted Secondary structure																																															.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300																							.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.							320	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query Sequence		H	T	P	L	T	Q	W	Q	P	L	H	I	H	H	A	A	S	H	V	T	G	R	V	S	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	N	L	A	E	L	V	F	D	T	P	L	W	L	A	D	N	D	.	.	.	.	.	.	R	L	V	L	R	D	I
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation
Template Sequence		P	T	A	L	A	N	G	Y	T	P	V	L	H	V	H	T	A	S	V	A	C	R	V	S	E	L	V	S	K	L	D	P	R	T	G	Q	E	A	E	K	N	P	Q	F	L	K	Q	G	D	V	A	I	V	K	F	K	P	I	K	P	L	C	V	E	K	Y	N	E	F	P	P	L	G	R	F	A	M	R	D	M
Template Known Secondary structure		S	S		B		T	T								T	T																T	T	T							S		S		B		T	T										S	S							T	T	T		G	G	G	S							T
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	R	N	T	L	A	G	A	R	V	V	M	L	N	P	P
Query Conservation
Alig confidence			.	.
Template Conservation			.	.
Template Sequence		G	.	.	K	T	V	G	V	G	I	I	V	D	V	K	P	A
Template Known Secondary structure		T	.	.
Template Predicted Secondary structure			.	.
Template SS confidence
		416			.	.	.	420	.	.	.	.	.	.	.	.	.	430

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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