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Job DescriptionP14081
Confidence100.00%DateThu Jan 5 11:33:54 GMT 2012
Rank17Aligned Residues330
% Identity25%Templatec1s0uA_
PDB info PDB header:translationChain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: eif2gamma apo
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MIIATAGHVDHGKTTLLQAITGV. . . . . . . . . . . . . . . NADRLPEEKKRGMTIDLGYAYWPQPDGRVPGFIDVPGHEKFL
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Template Sequence  VNIGMVGHVDHGKTSLTKALTGVWTDRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLM
Template Known Secondary structure  S
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   38.40.........50.........60.........70.........80.........90.........100.........110.......
 
   66...70.........80........ .90.........100.........110.........120.........130.........140....
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Query Sequence  SNMLAGVGGIDHALLVVACDDGV. MAQTREHLAILQLTGNPMLTVALTKADRVDEARVDEVERQVKEVLREYGFAEAKLF
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Template Sequence  ATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPII
Template Known Secondary structure  TT
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   125....130.........140.........150.........160.........170.........180.........190.........200....
 
   145....150.........160.........170. ........180.........190.........200.........210....
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Query Sequence  ITAATEGRGMDALREHLLQLPEREHAS. . . . . . . . . QHSFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDSLWLTGVNK.
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Template Sequence  PIN. . . . . . IDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKV
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   205.. ..210.........220.........230.........240.........250.........260.........270........
 
   215....220.........230.........240.. .......250.........260.... .....270....
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Query Sequence  . . . . . . . . . . . PMRVRALHAQNQPTETANAGQRIALNIA. . . GDAEKEQINRGDWLLADVPPEP. . . . FTRVIVELQT. .
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Template Sequence  TEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPY. LTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVV
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   285....290.........300.........310.........320....... ..330.........340.........350.........360...
 
   275....280.........290.........300.........310.........320... ......330.......
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Query Sequence  . . . . . . . HTPLTQWQPLHIHHAASHVTGRVSLLEDNLAELVFDTPLWLADNDRLVL. . RDISARNTLAGARV
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Template Sequence  GTKEELKIEPLRTGEVLMLNIGTATTAGVITSARGDIADIKLKLPICAEIGDRVAISRRVGSRWRLIGYGTI
Template Known Secondary structure  S
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   364.....370.........380.........390.........400.........410.........420.........430.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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