Job Description P14081 Confidence 100.00% Date Thu Jan 5 11:33:54 GMT 2012 Rank 16 Aligned Residues 321 % Identity 26% Template c1r5nA_ PDB info PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp- PDBTitle: crystal structure analysis of sup35 complexed with gdp Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	I	A	T	A	G	H	V	D	H	G	K	T	T	L	L	Q	A	I	T	G	V	N	A	D	R	L	P	E	E	K	K	R	G	M	T	I	D	L	G	Y	A	Y	W	P	Q	P	D	G	R	V	P	G	F	I	D	V	P	G	H	E	K	F	L	S	N	M	L	A	G	V	G	G	I	D	H	A	L	L
Query Conservation
Alig confidence																								.																									.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.																									.																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	N	I	V	F	I	G	H	V	D	A	G	K	S	T	L	G	G	N	I	L	F	.	L	T	G	M	V	D	K	R	T	M	E	K	I	E	R	E	A	K	R	A	Y	F	E	T	.	E	H	R	R	F	S	L	L	D	A	P	G	A	S	Q	.	.	.	.	.	.	.	.	.	.	.	A	D	I	G	V	L
Template Known Secondary structure										T	T	S	S											.		T	T	S	S																				.	S	S											T	T	S	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																								.																									.																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.												300	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90								.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.																												.	.	.	.																						.	.	.	.
Query SS confidence												.	.	.	.	.	.	.																												.	.	.	.																						.	.	.	.
Query Sequence		V	V	A	C	D	D	G	V	M	A	.	.	.	.	.	.	.	Q	T	R	E	H	L	A	I	L	Q	L	T	G	N	P	M	L	T	V	A	L	T	K	A	D	R	V	.	.	.	.	D	E	A	R	V	D	E	V	E	R	Q	V	K	E	V	L	R	E	Y	G	F	.	.	.	.	A	E	A	K	L	F	I
Query Conservation												.	.	.	.	.	.	.																												.	.	.	.																						.	.	.	.
Alig confidence												.	.	.	.	.	.	.																												.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		V	I	S	A	R	R	G	E	F	E	A	G	F	E	R	G	G	Q	T	R	E	H	A	V	L	A	R	T	Q	G	I	N	H	L	V	V	V	I	N	K	M	D	E	P	S	V	Q	W	S	E	E	R	Y	K	E	C	V	D	K	L	S	M	F	L	R	R	V	A	G	Y	N	S	K	T	D	V	K	Y	M	P
Template Known Secondary structure						S	T	T					T	T	S	S	S													T	T		S	S								S	S	S	T	T		S	S																								T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.															.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	A	A	T	E	G	R	G	M	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	E	H	L	L	Q	L	P	E	R	E	H	A	S	Q	H	S	F	R	L	A	I	D	R	A	F	T	V	K	G	A	G	L	V	V	T	G	T	A	L	S	G	E	V	K	V	G	D	S	L	W	L	T	G
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																																						.	.
Template Sequence		V	S	A	Y	T	G	Q	N	V	K	D	R	V	D	S	S	V	C	P	W	Y	Q	G	P	S	L	L	E	Y	L	D	S	M	T	H	L	E	R	K	V	N	A	P	F	I	M	P	I	A	S	K	Y	.	.	K	D	L	G	T	I	L	E	G	K	I	E	A	G	S	I	K	K	N	S	N	V	L	V	M	P
Template Known Secondary structure			B	T	T	T	T	B	T	T	S	S				T	T	T		T	T			S																		T	S											.	.		S	S	S									B	S				S	S							T
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.			.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure														.																																										.	.	.	.
Query SS confidence														.																																										.	.	.	.
Query Sequence		V	N	K	P	M	R	V	R	A	L	H	A	.	Q	N	Q	P	T	E	T	A	N	A	G	Q	R	I	A	L	N	I	A	G	D	A	E	K	E	Q	I	N	R	G	D	W	L	L	A	D	V	P	P	E	P	.	.	.	.	F	T	R	V	I	V	E	L	Q	T	H	T	P	L	T	Q	W	Q	P	L	H	I
Query Conservation														.																																										.	.	.	.
Alig confidence														.																					.	.																				.	.	.	.
Template Conservation																																			.	.
Template Sequence		I	N	Q	T	L	E	V	T	A	I	Y	D	E	A	D	E	E	I	S	S	S	I	C	G	D	Q	V	R	L	R	V	R	G	.	.	D	D	S	D	V	Q	T	G	Y	V	L	T	S	T	K	N	P	V	H	A	T	T	R	F	I	A	Q	I	A	I	L	E	L	P	S	I	L	T	T	G	Y	S	C	V	M
Template Known Secondary structure		T	T											T	T					S				T	T									S	.	.			S	S			T	T						S	S	S															S	S					B	S	S
Template Predicted Secondary structure																																			.	.
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.			.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300																						.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.							320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query Sequence		H	H	A	A	S	H	V	T	G	R	V	S	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	N	L	A	E	L	V	F	D	T	P	L	W	L	A	D	N	D	.	.	.	.	.	.	R	L	V	L	R	D	I	S	A	R	N	T	L	A	G	A	R	V	V	M
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.									.	.
Template Conservation																																																																						.	.
Template Sequence		H	I	H	T	A	V	E	E	V	S	F	A	K	L	L	H	K	L	D	K	T	N	R	K	S	K	K	P	P	M	F	A	T	K	G	M	K	I	I	A	E	L	E	T	Q	T	P	V	C	M	E	R	F	E	D	Y	Q	Y	M	G	R	F	T	L	R	D	Q	G	.	.	T	T	V	A	V	G	K	V	V	K
Template Known Secondary structure			S	S	S																S	S					S	S			S	B			T	T																		T	T	T		G	G	G	G							T	T	.	.
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		582	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.			650	.	.	.	.	.	.	.	.	.
		340
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		660

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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