Job Description P14081 Confidence 100.00% Date Thu Jan 5 11:33:54 GMT 2012 Rank 9 Aligned Residues 336 % Identity 29% Template c1mj1A_ PDB info PDB header:ribosome Chain: A: PDB Molecule:elongation factor tu; PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome Resolution 13.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.															.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	I	A	T	A	G	H	V	D	H	G	K	T	T	L	L	Q	A	I	T	G	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	R	L	P	E	E	K	K	R	G	M	T	I	D	L	G	Y	A	Y	W	P	Q	P	D	G	R	V	P	G	F	I	D	V	P	G	H	E	K	F	L	S
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																.
Template Sequence		V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	L	T	Y	V	A	A	A	E	N	R	N	V	E	V	K	D	Y	G	D	I	D	K	A	R	E	E	R	A	R	G	I	T	I	N	T	A	H	V	E	Y	E	T	A	.	K	R	H	Y	S	H	V	D	C	R	G	H	A	D	Y	I	K
Template Known Secondary structure									S	T	T	S	S																S	T	T										S		S						T	T	S			S									S	.	S											S	G	G	G
Template Predicted Secondary structure																																																																.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.
Predicted Secondary structure																																																					.																						.	.
Query SS confidence																																																					.																						.	.
Query Sequence		N	M	L	A	G	V	G	G	I	D	H	A	L	L	V	V	A	C	D	D	G	V	M	A	Q	T	R	E	H	L	A	I	L	Q	L	T	G	N	P	M	L	T	V	A	L	T	K	A	D	R	V	.	D	E	A	R	V	D	E	V	E	R	Q	V	K	E	V	L	R	E	Y	G	F	.	.	A	E	A	K	L
Query Conservation																																																					.																						.	.
Alig confidence																																																					.																						.	.
Template Conservation
Template Sequence		N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	S	A	A	D	G	R	M	R	Q	T	R	E	H	I	L	L	A	R	Q	V	G	V	R	Y	I	V	V	F	M	N	K	V	D	M	V	D	D	R	E	L	L	D	L	V	E	M	E	V	R	D	L	L	N	Q	Y	E	F	R	G	D	E	V	R	V
Template Known Secondary structure								T	T		S	S							T	T	T		S														T	T											G	G	G																					T	T	S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		144	.	.	.	.	.	150	.	.	.	.																			.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		F	I	T	A	A	T	E	G	R	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	L	R	E	H	L	L	Q	L	P	E	.	R	E	H	A	S	Q	H	S	F	R	L	A	I	D	R	A	F	T	V	K	G	A	G	L	V	V	T	G	T	A	L	S	G	E	V	K	V	G
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation
Template Sequence		I	R	G	S	A	L	L	A	L	E	E	M	H	K	N	R	K	T	K	R	G	E	N	E	W	V	D	K	I	W	E	L	L	D	A	I	D	E	Y	I	R	T	R	V	R	D	V	D	K	R	F	L	M	R	V	E	D	V	F	T	I	T	G	R	G	T	V	A	T	G	R	I	E	R	G	K	V	K	V	G
Template Known Secondary structure																	T	T			T	T	T																	T	S						B	S	S	S													T	T	T											S				T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		205	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure											.	.	.																																																															.	.	.	.	.	.
Query SS confidence											.	.	.																																																															.	.	.	.	.	.
Query Sequence		D	S	L	W	L	T	G	V	N	.	.	.	K	P	M	R	V	R	A	L	H	A	Q	N	Q	P	T	E	T	A	N	A	G	Q	R	I	A	L	N	I	A	G	D	A	E	K	E	Q	I	N	R	G	D	W	L	L	A	D	V	P	P	E	P	F	T	R	V	I	V	E	L	Q	T	H	.	.	.	.	.	.
Query Conservation											.	.	.																																																															.	.	.	.	.	.
Alig confidence											.	.	.																															.																																.	.	.	.	.	.
Template Conservation																																												.
Template Sequence		D	E	V	E	I	V	G	L	A	R	E	T	R	K	T	V	V	T	G	V	E	M	H	R	K	T	L	Q	E	G	I	A	G	D	N	V	G	L	L	L	R	G	.	V	S	R	E	E	V	E	R	G	Q	V	L	A	K	R	G	S	I	T	R	H	T	K	F	E	A	S	V	Y	I	L	K	K	E	E	G	G
Template Known Secondary structure								S	S	S	S	S											S	S	S	S	B		S				T	T								S	S	.			G	G	G			T	T					S	T	T	S																G	G	G	T
Template Predicted Secondary structure																																												.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
				276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300										.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure		.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		.	.	T	P	L	T	Q	W	Q	P	L	H	I	H	H	A	A	S	H	V	T	G	R	V	S	L	L	.	.	.	.	.	.	.	.	.	E	D	N	L	A	E	L	V	F	D	T	P	L	W	L	A	D	N	D	R	L	V	L	R	D	I	S	A	R	N	T	L	A	G	A	R	V	V	M	L
Query Conservation		.	.																										.	.	.	.	.	.	.	.	.
Alig confidence		.	.																										.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																																																	.	.
Template Sequence		R	H	T	G	F	F	T	G	Y	R	R	Q	F	Y	F	R	T	T	D	V	T	G	V	V	R	L	R	Q	G	V	E	M	V	M	R	G	D	N	V	T	F	T	V	E	L	I	K	R	V	A	L	E	E	G	L	R	F	A	I	R	E	G	G	.	.	R	T	V	G	A	G	V	V	T	K	I
Template Known Secondary structure			S	S		B		T	T								T	T											T	T				B		T	T																	T	T								T	T	.	.
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.			.	.	.	.	.	.	.	400	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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