Job Description P14081 Confidence 100.00% Date Thu Jan 5 11:33:54 GMT 2012 Rank 6 Aligned Residues 336 % Identity 29% Template c1kk3A_ PDB info PDB header:translation Chain: A: PDB Molecule:eif2gamma; PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+ Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.																							50	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	I	A	T	A	G	H	V	D	H	G	K	T	T	L	L	Q	A	I	T	G	V	N	A	D	R	L	P	E	E	K	K	R	G	M	T	I	D	L	G	Y	A	Y	W	P	Q	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	V	P	G	F	I	D	V
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		V	N	I	G	M	V	G	H	V	D	H	G	K	T	T	L	T	K	A	L	T	G	V	W	.	.	T	D	S	E	E	L	R	R	G	I	T	I	K	I	G	F	A	D	A	E	I	R	R	C	P	N	C	G	R	Y	S	T	S	P	V	C	P	Y	C	G	H	E	T	E	F	V	R	R	V	S	F	I	D	A
Template Known Secondary structure								S	S	T	T	S	S										T			.	.					T	T	S	S		S	S	S													T	T	T					S	S	S	B		T	T	T			B
Template Predicted Secondary structure																										.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		P	G	H	E	K	F	L	S	N	M	L	A	G	V	G	G	I	D	H	A	L	L	V	V	A	C	D	D	G	V	.	M	A	Q	T	R	E	H	L	A	I	L	Q	L	T	G	N	P	M	L	T	V	A	L	T	K	A	D	R	V	D	E	A	R	V	D	E	V	E	R	Q	V	K	E	V	L	R	E	Y	G
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		P	G	H	E	A	L	M	T	T	M	L	A	G	A	S	L	M	D	G	A	I	L	V	I	A	A	N	E	P	C	P	R	P	Q	T	R	E	H	L	M	A	L	Q	I	I	G	Q	K	N	I	I	I	A	Q	N	K	I	E	L	V	D	K	E	K	A	L	E	N	Y	R	Q	I	K	E	F	I	E	G	T	V
Template Known Secondary structure		S	S												G	G	G		S								T	T	S		S																T											G	G	G	S																	T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																															.																						.	.	.	.	.
Query SS confidence																															.																						.	.	.	.	.
Query Sequence		F	A	E	A	K	L	F	I	T	A	A	T	E	G	R	G	M	D	A	L	R	E	H	L	L	Q	L	P	E	.	R	E	H	A	S	Q	H	S	F	R	L	A	I	D	R	A	F	T	V	K	G	.	.	.	.	.	A	G	L	V	V	T	G	T	A	L	S	G	E	V	K	V	G	D	S	L	W	L	T	G
Query Conservation																															.																						.	.	.	.	.
Alig confidence																															.																						.	.	.	.	.
Template Conservation
Template Sequence		A	E	N	A	P	I	I	P	I	S	A	L	H	G	A	N	I	D	V	L	V	K	A	I	E	D	F	I	P	T	P	K	R	D	P	N	K	P	P	K	M	L	V	L	R	S	F	D	V	N	K	P	G	E	K	L	V	G	G	V	L	G	G	S	I	V	Q	G	K	L	K	V	G	D	E	I	E	I	R	P
Template Known Secondary structure		T	T	T							B	T	T	T	T	B	T												S							T	T	S													S																		S				T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		212													.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.																							.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.																							.	.	.	.
Query Sequence		V	.	.	.	.	.	.	.	.	.	.	.	.	N	K	P	M	R	V	R	A	L	H	A	Q	N	Q	P	T	E	T	A	N	A	G	Q	R	I	A	L	N	I	A	.	.	.	G	D	A	E	K	E	Q	I	N	R	G	D	W	L	L	A	D	V	P	P	E	P	.	.	.	.	F	T	R	V	I	V	E	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.																							.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.		.																					.	.	.	.
Template Conservation																																																	.
Template Sequence		G	V	P	Y	E	E	H	G	R	I	K	Y	E	P	I	T	T	E	I	V	S	L	Q	A	G	G	Q	F	V	E	E	A	Y	P	G	G	L	V	G	V	G	T	K	L	D	P	Y	.	L	T	K	G	D	L	M	A	G	N	V	V	G	K	P	G	K	L	P	P	V	W	D	S	L	R	L	E	V	H	L	L
Template Known Secondary structure								T	T																	T	T				S				S	S	S							S	S		G	G	.	G	T	G	G	G	T	T	T	T						T	T		S
Template Predicted Secondary structure																																																	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		273								.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.																																																						.	.
Query SS confidence			.	.	.	.	.	.	.																																																						.	.
Query Sequence		Q	.	.	.	.	.	.	.	T	H	T	P	L	T	Q	W	Q	P	L	H	I	H	H	A	A	S	H	V	T	G	R	V	S	L	L	E	D	N	L	A	E	L	V	F	D	T	P	L	W	L	A	D	N	D	R	L	V	L	R	D	I	.	.	S	A	R	N	T	L	A	G	A	R	V	V	M
Query Conservation			.	.	.	.	.	.	.																																																						.	.
Alig confidence			.	.	.	.	.	.	.																																																						.	.
Template Conservation
Template Sequence		E	R	V	V	E	Q	E	L	K	V	E	P	I	K	R	K	E	V	L	L	L	N	V	G	T	A	R	T	M	G	L	V	T	G	L	G	K	D	E	I	E	V	K	L	Q	I	P	V	C	A	E	P	G	D	R	V	A	I	S	R	Q	I	G	S	R	W	R	L	I	G	Y	G	I	I	K	E
Template Known Secondary structure										S						T	T								T	T												T	T														T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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